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原始细胞模型中出现同步的充分条件。

Sufficient conditions for emergent synchronization in protocell models.

作者信息

Carletti T, Serra R, Poli I, Villani M, Filisetti A

机构信息

Département de Mathématique, Facultés Universitaires Notre Dame de la Paix, Rempart de la Vierge 8, B 5000 Namur, Belgium.

出版信息

J Theor Biol. 2008 Oct 21;254(4):741-51. doi: 10.1016/j.jtbi.2008.07.008. Epub 2008 Jul 16.

Abstract

In this paper, we study general protocell models aiming to understand the synchronization phenomenon of genetic material and container productions, a necessary condition to ensure sustainable growth in protocells and eventually leading to Darwinian evolution when applied to a population of protocells. Synchronization has been proved to be an emergent property in many relevant protocell models in the class of the so-called surface reaction models, assuming both linear- and non-linear dynamics for the involved chemical reactions. We here extend this analysis by introducing and studying a new class of models where the relevant chemical reactions are assumed to occur inside the protocell, in contrast with the former model where the reaction site was the external surface. While in our previous studies, the replicators were assumed to compete for resources, without any direct interaction among them, we here improve both models by allowing linear interaction between replicators: catalysis and/or inhibition. Extending some techniques previously introduced, we are able to give a quite general analytical answer about the synchronization phenomenon in this more general context. We also report on results of numerical simulations to support the theory, where applicable, and allow the investigation of cases which are not amenable to analytical calculations.

摘要

在本文中,我们研究通用的原始细胞模型,旨在理解遗传物质与容器生成的同步现象,这是确保原始细胞可持续生长并最终在应用于原始细胞群体时导致达尔文进化的必要条件。在所谓的表面反应模型类别中的许多相关原始细胞模型中,同步已被证明是一种涌现特性,其中假设所涉及的化学反应具有线性和非线性动力学。我们在此通过引入并研究一类新模型来扩展此分析,在这类新模型中,假设相关化学反应发生在原始细胞内部,这与反应位点在外部表面的前一种模型形成对比。在我们之前的研究中,复制因子被假定为争夺资源,它们之间没有任何直接相互作用,而我们在此通过允许复制因子之间的线性相互作用(催化和/或抑制)来改进这两种模型。通过扩展先前引入的一些技术,我们能够在这个更一般的背景下给出关于同步现象的相当通用的分析答案。我们还报告了数值模拟结果以支持该理论,在适用的情况下,并允许对不适用于解析计算的情况进行研究。

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