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通过从头算分子动力学研究视觉色素发色团模型的光化学

Photochemistry of visual pigment chromophore models by ab initio molecular dynamics.

作者信息

Weingart Oliver, Schapiro Igor, Buss Volker

机构信息

Department of Chemistry, University of Duisburg-Essen, 47048 Duisburg, Germany.

出版信息

J Phys Chem B. 2007 Apr 12;111(14):3782-8. doi: 10.1021/jp0683216. Epub 2007 Mar 23.

Abstract

Ab initio excited-state molecular dynamics calculations have been performed to study the effect of methyl substitution and chromophore distortion on the photoreaction of different four-double-bond retinal model chromophores. Randomly distributed starting geometries were generated by zero-point energy sampling; after Franck-Condon excitation the reaction was followed on the S1 surface. For determining the photoproduct and its configuration, a simplified approach--torsion angle following--is discussed and applied. We find that chromophore distortion significantly affects the outcome of the photoreaction: with dihedral angles taken from the rhodopsin-embedded 11-cis-retinal chromophore, the reaction rate of the model chromophore is increased by a factor of 3 compared to that of the relaxed chromophore. Also, the reaction proceeds in a completely stereoselective manner involving only the cis double bond and with a minimum quantum yield of 72%. Bond torsion is more effective than methyl substitution for fast and selective photochemistry, which is in agreement with photophysical measurements on rhodopsin analogues. We conclude that apart from the geometric distortions caused by the protein pocket it is not necessary to postulate other specific interactions between the protein and the chromophore to effect the selective and ultrafast photoreaction in rhodopsin.

摘要

已进行从头算激发态分子动力学计算,以研究甲基取代和发色团扭曲对不同四双键视黄醛模型发色团光反应的影响。通过零点能量采样生成随机分布的起始几何构型;在弗兰克-康登激发后,在S1表面跟踪反应。为了确定光产物及其构型,讨论并应用了一种简化方法——跟踪扭转角。我们发现发色团扭曲显著影响光反应的结果:与嵌入视紫红质的11-顺式视黄醛发色团的二面角相比,模型发色团的反应速率提高了3倍。此外,反应以完全立体选择性的方式进行,仅涉及顺式双键,最小量子产率为72%。对于快速和选择性光化学,键扭转比甲基取代更有效,这与对视紫红质类似物的光物理测量结果一致。我们得出结论,除了蛋白质口袋引起的几何扭曲外,无需假定蛋白质和发色团之间存在其他特定相互作用来实现视紫红质中的选择性和超快光反应。

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