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DPTF:杨树转录因子数据库。

DPTF: a database of poplar transcription factors.

作者信息

Zhu Qi-Hui, Guo An-Yuan, Gao Ge, Zhong Ying-Fu, Xu Meng, Huang Minren, Luo Jinchu

机构信息

Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering and College of Life Sciences, Peking University, Beijing 100871, PR China.

出版信息

Bioinformatics. 2007 May 15;23(10):1307-8. doi: 10.1093/bioinformatics/btm113. Epub 2007 Mar 28.

Abstract

The database of poplar transcription factors (DPTF) is a plant transcription factor (TF) database containing 2576 putative poplar TFs distributed in 64 families. These TFs were identified from both computational prediction and manual curation. We have provided extensive annotations including sequence features, functional domains, GO assignment and expression evidence for all TFs. In addition, DPTF contains cross-links to the Arabidopsis and rice transcription factor databases making it a unique resource for genome-scale comparative studies of transcriptional regulation in model plants. Availiability: DPTF is available at http://dptf.cbi.pku.edu.cn.

摘要

杨树转录因子数据库(DPTF)是一个植物转录因子(TF)数据库,包含分布在64个家族中的2576个假定的杨树转录因子。这些转录因子是通过计算预测和人工整理鉴定出来的。我们为所有转录因子提供了广泛的注释,包括序列特征、功能域、基因本体(GO)注释和表达证据。此外,DPTF包含与拟南芥和水稻转录因子数据库的交叉链接,使其成为模型植物转录调控基因组规模比较研究的独特资源。可用性:DPTF可在http://dptf.cbi.pku.edu.cn获取。

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