DRTF：水稻转录因子数据库。

DRTF: a database of rice transcription factors.

作者信息

Gao Ge, Zhong Yingfu, Guo Anyuan, Zhu Qihui, Tang Wen, Zheng Weimou, Gu Xiaocheng, Wei Liping, Luo Jingchu

机构信息

Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China.

出版信息

Bioinformatics. 2006 May 15;22(10):1286-7. doi: 10.1093/bioinformatics/btl107. Epub 2006 Mar 21.

DOI:10.1093/bioinformatics/btl107

PMID:16551659

Abstract

SUMMARY

DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica, distributed in 63 families, identified by computational prediction and manual curation. It includes detailed annotations of each TF including sequence features, functional domains, Gene Ontology assignment, chromosomal localization, EST and microarray expression information, as well as multiple sequence alignment of the DNA-binding domains for each TF family. The database can be browsed and searched with a user-friendly web interface.

AVAILABILITY

DRTF is available at http://drtf.cbi.pku.edu.cn

摘要

水稻转录因子数据库（DRTF）在籼稻中包含2025个假定转录因子（TFs），在粳稻中包含2384个，分布于63个家族，通过计算预测和人工整理鉴定得出。它包括每个转录因子的详细注释，如序列特征、功能结构域、基因本体论分类、染色体定位、EST和微阵列表达信息，以及每个转录因子家族DNA结合结构域的多序列比对。该数据库可通过用户友好的网页界面进行浏览和搜索。