• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

秀丽隐杆线虫自然种群中的时间动态与连锁不平衡

Temporal dynamics and linkage disequilibrium in natural Caenorhabditis elegans populations.

作者信息

Barrière Antoine, Félix Marie-Anne

机构信息

Institut Jacques Monod, CNRS-Universities of Paris 6 and 7, 75251 Paris Cedex 05, France.

出版信息

Genetics. 2007 Jun;176(2):999-1011. doi: 10.1534/genetics.106.067223. Epub 2007 Apr 3.

DOI:10.1534/genetics.106.067223
PMID:17409084
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1894625/
Abstract

Caenorhabditis elegans is a major laboratory model system yet a newcomer to the field of population genetics, and relatively little is known of its biology in the wild. Recent studies of natural populations at a single time point revealed strong spatial population structure and suggested that these populations may be very dynamic. We have therefore studied several natural C. elegans populations over time and genotyped them at polymorphic microsatellite loci. While some populations appear to be genetically stable over the course of observation, others seem to go extinct, with full replacement of multilocus genotypes upon regrowth. The frequency of heterozygotes indicates that outcrossing occurs at a mean frequency of 1.7% and is variable between populations. However, in genetically stable populations, linkage disequilibrium between different chromosomes can be maintained over several years at a level much higher than expected from the heterozygote frequency. C. elegans seems to follow metapopulation dynamics, and the maintenance of linkage disequilibrium despite a low yet significant level of outcrossing suggests that selection may act against the progeny of outcrossings.

摘要

秀丽隐杆线虫是一种主要的实验室模型系统,但在群体遗传学领域却是一个新成员,人们对其在自然环境中的生物学特性了解相对较少。近期对自然种群在单一时间点的研究揭示了强烈的空间种群结构,并表明这些种群可能非常动态。因此,我们长期研究了几个秀丽隐杆线虫自然种群,并在多态微卫星位点对它们进行了基因分型。虽然在观察过程中一些种群似乎基因稳定,但其他种群似乎灭绝了,重新生长时多位点基因型被完全取代。杂合子频率表明异交发生的平均频率为1.7%,且在不同种群间存在差异。然而,在基因稳定的种群中,不同染色体之间的连锁不平衡可以在几年内维持在一个比根据杂合子频率预期的水平高得多的水平。秀丽隐杆线虫似乎遵循集合种群动态,尽管异交水平较低但显著,连锁不平衡的维持表明选择可能作用于异交后代。

相似文献

1
Temporal dynamics and linkage disequilibrium in natural Caenorhabditis elegans populations.秀丽隐杆线虫自然种群中的时间动态与连锁不平衡
Genetics. 2007 Jun;176(2):999-1011. doi: 10.1534/genetics.106.067223. Epub 2007 Apr 3.
2
High local genetic diversity and low outcrossing rate in Caenorhabditis elegans natural populations.秀丽隐杆线虫自然种群中的高局部遗传多样性和低异交率。
Curr Biol. 2005 Jul 12;15(13):1176-84. doi: 10.1016/j.cub.2005.06.022.
3
Outcrossing and the maintenance of males within C. elegans populations.异交和秀丽隐杆线虫种群内雄性的维持。
J Hered. 2010 Mar-Apr;101 Suppl 1(Suppl 1):S62-74. doi: 10.1093/jhered/esq003. Epub 2010 Mar 8.
4
Sampling from natural populations with RNAI reveals high outcrossing and population structure in Caenorhabditis elegans.利用RNA干扰技术对自然种群进行抽样研究,揭示了秀丽隐杆线虫的高异交率和种群结构。
Curr Biol. 2005 Sep 6;15(17):1598-602. doi: 10.1016/j.cub.2005.08.034.
5
Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans.部分自体受精线虫秀丽隐杆线虫野生种群中的核苷酸多态性与连锁不平衡
Genetics. 2006 Jan;172(1):171-84. doi: 10.1534/genetics.105.048207. Epub 2005 Nov 4.
6
Parallel genome-wide fixation of ancestral alleles in partially outcrossing experimental populations of Caenorhabditis elegans.秀丽隐杆线虫部分异交实验种群中祖先等位基因的全基因组平行固定。
G3 (Bethesda). 2014 Jul 1;4(9):1657-65. doi: 10.1534/g3.114.012914.
7
High nucleotide polymorphism and rapid decay of linkage disequilibrium in wild populations of Caenorhabditis remanei.秀丽隐杆线虫野生种群中的高核苷酸多态性和连锁不平衡的快速衰减。
Genetics. 2006 Oct;174(2):901-13. doi: 10.1534/genetics.106.061879. Epub 2006 Sep 1.
8
The Local Coexistence Pattern of Selfing Genotypes in Natural Metapopulations.自然泛种群中自交基因型的局域共存模式。
Genetics. 2018 Feb;208(2):807-821. doi: 10.1534/genetics.117.300564. Epub 2017 Dec 13.
9
Evolution of outcrossing in experimental populations of Caenorhabditis elegans.实验群体中秀丽隐杆线虫异交的进化。
PLoS One. 2012;7(4):e35811. doi: 10.1371/journal.pone.0035811. Epub 2012 Apr 23.
10
Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species.秀丽隐杆线虫的群体遗传学:一个广泛分布物种中低多态性的悖论。
Genetics. 2003 Jan;163(1):147-57. doi: 10.1093/genetics/163.1.147.

引用本文的文献

1
Hill-Robertson interference may bias the inference of fitness effects of new mutations in highly selfing species.希尔-罗伯逊干涉可能会使对高度自交物种中新突变适应性效应的推断产生偏差。
Evolution. 2025 Mar 3;79(3):342-363. doi: 10.1093/evolut/qpae168.
2
Long-Term Maintenance of Complex Chromosomal Inversion Polymorphism in .复杂染色体倒位多态性的长期维持在……中
Ecol Evol. 2024 Oct 27;14(10):e70443. doi: 10.1002/ece3.70443. eCollection 2024 Oct.
3
Life history in Caenorhabditis elegans: from molecular genetics to evolutionary ecology.秀丽隐杆线虫的生活史:从分子遗传学到进化生态学。
Genetics. 2024 Nov 6;228(3). doi: 10.1093/genetics/iyae151.
4
Natural variation in the egg-laying circuit modulates an intergenerational fitness trade-off.产卵回路的自然变异调节了代际间的适应度权衡。
Elife. 2024 Apr 2;12:RP88253. doi: 10.7554/eLife.88253.
5
Outcrossing in increases in response to food limitation.异交在食物受限的情况下会增加。
Ecol Evol. 2024 Mar 20;14(3):e11166. doi: 10.1002/ece3.11166. eCollection 2024 Mar.
6
A simple protocol for cultivating the bacterivorous soil nematode in its natural ecology in the laboratory.一种在实验室自然生态环境中培养食细菌土壤线虫的简单方案。
Front Microbiol. 2024 Feb 27;15:1347797. doi: 10.3389/fmicb.2024.1347797. eCollection 2024.
7
Hill-Robertson interference may bias the inference of fitness effects of new mutations in highly selfing species.希尔-罗伯逊干涉可能会使对高度自交物种中新突变适合度效应的推断产生偏差。
bioRxiv. 2024 Sep 23:2024.02.06.579142. doi: 10.1101/2024.02.06.579142.
8
Genome-wide association and environmental suppression of the mortal germline phenotype of wild C. elegans.全基因组关联分析和环境抑制野生秀丽隐杆线虫生殖系表型的致死性。
EMBO Rep. 2023 Dec 6;24(12):e58116. doi: 10.15252/embr.202358116. Epub 2023 Nov 20.
9
Effect of recombination on genetic diversity of Caenorhabditis elegans.重组对秀丽隐杆线虫遗传多样性的影响。
Sci Rep. 2023 Sep 30;13(1):16425. doi: 10.1038/s41598-023-42600-5.
10
Genomic diversity landscapes in outcrossing and selfing Caenorhabditis nematodes.异交和自交秀丽隐杆线虫的基因组多样性景观。
PLoS Genet. 2023 Aug 16;19(8):e1010879. doi: 10.1371/journal.pgen.1010879. eCollection 2023 Aug.

本文引用的文献

1
ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.估计用于群体结构分析的F统计量
Evolution. 1984 Nov;38(6):1358-1370. doi: 10.1111/j.1558-5646.1984.tb05657.x.
2
Arlequin (version 3.0): an integrated software package for population genetics data analysis.Arlequin(版本 3.0):一个用于群体遗传学数据分析的集成软件包。
Evol Bioinform Online. 2007 Feb 23;1:47-50.
3
Ecology of Caenorhabditis species.秀丽隐杆线虫属物种的生态学
WormBook. 2006 Jan 9:1-14. doi: 10.1895/wormbook.1.37.1.
4
Isolation of C. elegans and related nematodes.秀丽隐杆线虫及相关线虫的分离
WormBook. 2006 Jul 17:1-9. doi: 10.1895/wormbook.1.115.1.
5
Inbreeding and outbreeding depression in Caenorhabditis nematodes.秀丽隐杆线虫中的近亲繁殖和远亲繁殖衰退
Evolution. 2007 Jun;61(6):1339-52. doi: 10.1111/j.1558-5646.2007.00118.x.
6
Evolution of sex: why do organisms shuffle their genotypes?性别的进化:生物体为何要打乱其基因型?
Curr Biol. 2006 Sep 5;16(17):R696-704. doi: 10.1016/j.cub.2006.07.063.
7
Genetic variation for outcrossing among Caenorhabditis elegans isolates.秀丽隐杆线虫分离株间异交的遗传变异。
Evolution. 2006 Jun;60(6):1300-5.
8
Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers.基于全基因组单核苷酸多态性标记的拟南芥大规模种群结构证据。
Theor Appl Genet. 2006 Apr;112(6):1104-14. doi: 10.1007/s00122-006-0212-7. Epub 2006 Feb 2.
9
Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans.部分自体受精线虫秀丽隐杆线虫野生种群中的核苷酸多态性与连锁不平衡
Genetics. 2006 Jan;172(1):171-84. doi: 10.1534/genetics.105.048207. Epub 2005 Nov 4.
10
Sampling from natural populations with RNAI reveals high outcrossing and population structure in Caenorhabditis elegans.利用RNA干扰技术对自然种群进行抽样研究,揭示了秀丽隐杆线虫的高异交率和种群结构。
Curr Biol. 2005 Sep 6;15(17):1598-602. doi: 10.1016/j.cub.2005.08.034.