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体积学习算法显著改进了用于预测外源性雌激素雌激素活性的偏最小二乘模型。

Volume learning algorithm significantly improved PLS model for predicting the estrogenic activity of xenoestrogens.

作者信息

Kovalishyn Vasyl V, Kholodovych Vladyslav, Tetko Igor V, Welsh William J

机构信息

Institute of Bioorganic Chemistry and Petrochemistry, Kyiv, Murmanska 1, 02660, Ukraine.

出版信息

J Mol Graph Model. 2007 Sep;26(2):591-4. doi: 10.1016/j.jmgm.2007.03.005. Epub 2007 Mar 19.

DOI:10.1016/j.jmgm.2007.03.005
PMID:17433745
Abstract

Volume learning algorithm (VLA) artificial neural network and partial least squares (PLS) methods were compared using the leave-one-out cross-validation procedure for prediction of relative potency of xenoestrogenic compounds to the estrogen receptor. Using Wilcoxon signed rank test we showed that VLA outperformed PLS by producing models with statistically superior results for a structurally diverse set of compounds comprising eight chemical families. Thus, CoMFA/VLA models are successful in prediction of the endocrine disrupting potential of environmental pollutants and can be effectively applied for testing of prospective chemicals prior their exposure to the environment.

摘要

使用留一法交叉验证程序比较了体积学习算法(VLA)人工神经网络和偏最小二乘法(PLS),以预测异雌激素化合物对雌激素受体的相对效力。通过威尔科克森符号秩检验,我们表明,对于包含八个化学家族的结构多样的化合物集,VLA通过产生具有统计学上更优结果的模型,其表现优于PLS。因此,比较分子场分析/体积学习算法(CoMFA/VLA)模型在预测环境污染物的内分泌干扰潜力方面是成功的,并且可以有效地应用于在潜在化学品暴露于环境之前对其进行测试。

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Volume learning algorithm significantly improved PLS model for predicting the estrogenic activity of xenoestrogens.体积学习算法显著改进了用于预测外源性雌激素雌激素活性的偏最小二乘模型。
J Mol Graph Model. 2007 Sep;26(2):591-4. doi: 10.1016/j.jmgm.2007.03.005. Epub 2007 Mar 19.
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Prediction of toxicity and data exploratory analysis of estrogen-active endocrine disruptors using counter-propagation artificial neural networks.利用对传人工神经网络预测具有雌激素活性的内分泌干扰物的毒性和数据探索性分析。
J Mol Graph Model. 2010 Nov;29(3):450-60. doi: 10.1016/j.jmgm.2010.09.001. Epub 2010 Sep 17.
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Prediction of ligand binding affinity and orientation of xenoestrogens to the estrogen receptor by molecular dynamics simulations and the linear interaction energy method.通过分子动力学模拟和线性相互作用能方法预测异种雌激素与雌激素受体的配体结合亲和力和取向
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Variable selection and interpretation in structure-affinity correlation modeling of estrogen receptor binders.雌激素受体结合剂结构-亲和力相关建模中的变量选择与解释
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QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD principles.在经合组织原则指导下对大量不同化学品的雌激素活性进行定量构效关系预测。
Chem Res Toxicol. 2006 Nov;19(11):1540-8. doi: 10.1021/tx0601509.
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In silico screening of estrogen-like chemicals based on different nonlinear classification models.基于不同非线性分类模型的雌激素样化学物质的计算机模拟筛选
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Comparison of estrogen receptor alpha and beta subtypes based on comparative molecular field analysis (CoMFA).基于比较分子场分析(CoMFA)的雌激素受体α和β亚型比较
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Molecular structural characteristics as determinants of estrogen receptor selectivity.作为雌激素受体选择性决定因素的分子结构特征
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