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粘度依赖性蛋白质动力学

Viscosity-dependent protein dynamics.

作者信息

Finkelstein Ilya J, Massari Aaron M, Fayer M D

机构信息

Department of Chemistry, Stanford University, Stanford, California, USA.

出版信息

Biophys J. 2007 May 15;92(10):3652-62. doi: 10.1529/biophysj.106.093708.

Abstract

Spectrally resolved stimulated vibrational echo spectroscopy is used to investigate the dependence of fast protein dynamics on bulk solution viscosity at room temperature in four heme proteins: hemoglobin, myoglobin, a myoglobin mutant with the distal histidine replaced by a valine (H64V), and a cytochrome c552 mutant with the distal methionine replaced by an alanine (M61A). Fructose is added to increase the viscosity of the aqueous protein solutions over many orders of magnitude. The fast dynamics of the four globular proteins were found to be sensitive to solution viscosity and asymptotically approached the dynamical behavior that was previously observed in room temperature sugar glasses. The viscosity-dependent protein dynamics are analyzed in the context of a viscoelastic relaxation model that treats the protein as a deformable breathing sphere. The viscoelastic model is in qualitative agreement with the experimental data but does not capture sufficient system detail to offer a quantitative description of the underlying fluctuation amplitudes and relaxation rates. A calibration method based on the near-infrared spectrum of water overtones was constructed to accurately determine the viscosity of small volumes of protein solutions.

摘要

光谱分辨受激振动回声光谱法用于研究四种血红素蛋白在室温下快速蛋白质动力学对本体溶液粘度的依赖性,这四种蛋白分别是:血红蛋白、肌红蛋白、远端组氨酸被缬氨酸取代的肌红蛋白突变体(H64V)以及远端甲硫氨酸被丙氨酸取代的细胞色素c552突变体(M61A)。添加果糖以将蛋白质水溶液的粘度提高多个数量级。发现这四种球状蛋白的快速动力学对溶液粘度敏感,并渐近地接近先前在室温糖玻璃中观察到的动力学行为。在将蛋白质视为可变形呼吸球的粘弹性弛豫模型的背景下分析了粘度依赖性蛋白质动力学。粘弹性模型与实验数据在定性上一致,但没有捕捉到足够的系统细节以对潜在的波动幅度和弛豫速率提供定量描述。构建了一种基于水泛音近红外光谱的校准方法,以准确测定少量蛋白质溶液的粘度。

相似文献

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Viscosity-dependent protein dynamics.粘度依赖性蛋白质动力学
Biophys J. 2007 May 15;92(10):3652-62. doi: 10.1529/biophysj.106.093708.

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