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非谐系统的卡-帕里尼罗分子动力学研究:溶液中的曼尼希碱

Car-Parrinello molecular dynamics study of anharmonic systems: a Mannich base in solution.

作者信息

Jezierska Aneta, Panek Jarosław, Borstnik Urban, Mavri Janez, Janezic Dusanka

机构信息

University of Wrocław, Faculty of Chemistry, 14 F. Joliot-Curie, 50-383 Wrocław, Poland.

出版信息

J Phys Chem B. 2007 May 17;111(19):5243-8. doi: 10.1021/jp068676p. Epub 2007 Apr 21.

Abstract

A Car-Parrinello molecular dynamics study was performed for 4,5-dimethyl-2-(N,N-dimethylaminomethyl)phenol, a Mannich base, to investigate the vibrational properties in solution of its intramolecular hydrogen bond. The dynamic behavior of this hydrogen-bonded system was investigated using an explicit solvent model. Addition of a nonpolar solvent permitted inclusion of delicate environmental effects on the strongly anharmonic system which was studied from first principles. Molecular dynamics and a posteriori quantization of the O-H motion were applied to reproduce the vibrational features of the O-H stretching mode. Consistent application of Car-Parrinello dynamics based on the density functional theory with subsequent solution of the vibrational Schrödinger equation for the O-H stretching motion offers an effective method for strongly anharmonic systems, and this is supported by the comparison of the results with experimental spectra. As a further element of the intramolecular hydrogen bond study, the effects of deuteration were taken into account and a successful application of the O-H stretching mode quantization technique to the liquid phase is demonstrated. This provides a valuable computational methodology for investigations incorporating nuclear quantum effects in the liquid phase and enzyme active centers and can be used to investigate numerous systems that are not readily susceptible to experimental analysis.

摘要

对曼尼希碱4,5-二甲基-2-(N,N-二甲基氨基甲基)苯酚进行了Car-Parrinello分子动力学研究,以探究其分子内氢键在溶液中的振动性质。使用显式溶剂模型研究了该氢键体系的动力学行为。添加非极性溶剂能够考虑对强非谐体系的微妙环境影响,该体系是从第一性原理进行研究的。应用分子动力学和O-H运动的后验量子化来再现O-H伸缩模式的振动特征。基于密度泛函理论的Car-Parrinello动力学的一致应用以及随后对O-H伸缩运动的振动薛定谔方程的求解,为强非谐体系提供了一种有效的方法,这一点通过将结果与实验光谱进行比较得到了支持。作为分子内氢键研究的另一个要素,考虑了氘代的影响,并证明了O-H伸缩模式量子化技术在液相中的成功应用。这为研究液相和酶活性中心中包含核量子效应的体系提供了一种有价值的计算方法,并且可用于研究许多不易进行实验分析的体系。

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