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Car-Parrinello 模拟硫酸氢二氢钠中的氢键动力学。

Car-Parrinello simulation of hydrogen bond dynamics in sodium hydrogen bissulfate.

机构信息

National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia.

出版信息

J Chem Phys. 2010 Jun 14;132(22):224506. doi: 10.1063/1.3429251.

Abstract

We studied proton dynamics of a short hydrogen bond of the crystalline sodium hydrogen bissulfate, a hydrogen-bonded ferroelectric system. Our approach was based on the established Car-Parrinello molecular dynamics (CPMD) methodology, followed by an a posteriori quantization of the OH stretching motion. The latter approach is based on snapshot structures taken from CPMD trajectory, calculation of proton potentials, and solving of the vibrational Schrodinger equation for each of the snapshot potentials. The so obtained contour of the OH stretching band has the center of gravity at about 1540 cm(-1) and a half width of about 700 cm(-1), which is in qualitative agreement with the experimental infrared spectrum. The corresponding values for the deuterated form are 1092 and 600 cm(-1), respectively. The hydrogen probability densities obtained by solving the vibrational Schrodinger equation allow for the evaluation of potential of mean force along the proton transfer coordinate. We demonstrate that for the present system the free energy profile is of the single-well type and features a broad and shallow minimum near the center of the hydrogen bond, allowing for frequent and barrierless proton (or deuteron) jumps. All the calculated time-averaged geometric parameters were in reasonable agreement with the experimental neutron diffraction data. As the present methodology for quantization of proton motion is applicable to a variety of hydrogen-bonded systems, it is promising for potential use in computational enzymology.

摘要

我们研究了结晶硫酸钠双氢硫酸盐(一种氢键铁电体系)中短氢键的质子动力学。我们的方法基于已建立的 Car-Parrinello 分子动力学(CPMD)方法,随后对 OH 伸缩运动进行了后验量子化。后一种方法基于从 CPMD 轨迹中获取的快照结构、质子势的计算以及为每个快照势求解振动薛定谔方程。由此获得的 OH 伸缩带轮廓的重心约为 1540 cm(-1),半宽约为 700 cm(-1),与实验红外光谱定性一致。氘代形式的相应值分别为 1092 和 600 cm(-1)。通过求解振动薛定谔方程获得的氢概率密度允许沿质子转移坐标评估平均力势。我们证明,对于本体系,自由能分布呈单阱型,在氢键中心附近具有宽阔而浅的最小值,允许频繁且无势垒的质子(或氘核)跳跃。所有计算的时间平均几何参数均与实验中子衍射数据吻合良好。由于质子运动量子化的当前方法适用于多种氢键体系,因此有望在计算酶学中得到应用。

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