Wang J
Institute of Zoology, Zoological Society of London, London, UK.
Heredity (Edinb). 2007 Aug;99(2):205-17. doi: 10.1038/sj.hdy.6800984. Epub 2007 May 9.
Parentage exclusion probabilities are now routinely calculated in genetic marker-assisted parentage analyses to indicate the statistical power of the analyses achievable for a given set of markers, and to measure the informativeness of a set of markers for parentage inference. Previous formulas invariably assume that parentage is to be sought for a single offspring, while in practice multiple full siblings might be sampled (for example, seeds, eggs or young from a pair of monogamous parents) and their father, mother or both are to be assigned among a number of candidates. In this study, I derive formulas for parentage exclusion probabilities for an arbitrary number (n) of fullsibs, which reduce to previous equations for the special case of n=1. I also derive sibship exclusion probabilities, and investigate the power of differentiating half-sib, avuncular and grandparent-grandoffspring relationships using unlinked autosomal markers among different numbers of tested individuals. Applications of the formulas are demonstrated using both theoretical and empirical data sets of allele frequencies. The results from the study highlight the conclusion that the power of genealogical relationship inferences can be enhanced enormously by analysing multiple individuals for a given set of markers. The equations derived in this study allow more accurate determination of marker information and of the power of a parentage/sibship analysis. In addition, they can be used to guide experimental designs of parentage analyses in selecting markers and determining the number of offspring to be sampled and genotyped.
在遗传标记辅助的亲权分析中,现在通常会计算亲权排除概率,以表明对于给定的一组标记可实现的分析统计效力,并衡量一组标记对于亲权推断的信息量。先前的公式总是假定要为单个后代寻找亲权,而在实际中,可能会对多个全同胞进行采样(例如,来自一对一夫一妻制父母的种子、卵子或幼崽),并且要在多个候选个体中确定它们的父亲、母亲或双亲。在本研究中,我推导了任意数量(n)全同胞的亲权排除概率公式,对于n = 1的特殊情况,这些公式可简化为先前的方程。我还推导了同胞关系排除概率,并研究了使用不连锁的常染色体标记在不同数量的被测个体中区分半同胞、叔侄和祖孙关系的效力。使用等位基因频率的理论和实证数据集展示了这些公式的应用。该研究结果突出了这样一个结论:通过对给定的一组标记分析多个个体,可以极大地提高谱系关系推断的效力。本研究中推导的方程能够更准确地确定标记信息和亲权/同胞关系分析的效力。此外,它们可用于指导亲权分析的实验设计,以选择标记并确定要采样和进行基因分型的后代数量。