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东加尔各答湿地地区的细菌多样性:不同生物技术用途潜在细菌种群的可能鉴定。

Bacterial diversity of East Calcutta Wet land area: possible identification of potential bacterial population for different biotechnological uses.

作者信息

Ghosh Abhrajyoti, Maity Bhaswar, Chakrabarti Krishanu, Chattopadhyay Dhrubajyoti

机构信息

Dr. B C Guha Centre for Genetic Engineering and Biotechnology, University of Calcutta, 35, Ballygunge Circular Road, Calcutta, 700019, West Bengal, India.

出版信息

Microb Ecol. 2007 Oct;54(3):452-9. doi: 10.1007/s00248-007-9244-z. Epub 2007 May 20.

Abstract

The extent of microbial diversity in nature is still largely unknown, suggesting that there might be many more useful products yet to be identified from soil microorganisms. This insight provides the scientific foundation for a renewed interest in examining soil microorganisms for novel commercially important products. This has led us to access the metabolic potential of soil microorganisms via cultivation strategy. Keeping this in mind, we have performed a culture-dependent survey of important soil bacterial community diversity in East Calcutta Wetland area (Dhapa Landfill Area). We describe isolation of 38 strains, their phenotypic and biochemical characterization, and finally molecular identification by direct sequencing of polymerase chain reaction (PCR)-amplified 16S rRNA gene products. We have isolated and identified strains able to fix nitrogen, produce extracellular enzymes like protease, cellulase, xylanase, and amylase, and solubilize inorganic phosphates. Some isolates can synthesize extracellular insecticidal toxins. We find a good correlation between biochemical and phenotypic behavior and the molecular study using 16S rRNA gene of the isolates. Furthermore, our findings clearly indicate the composition of cultivable soil bacteria in East Calcutta Wetland Area.

摘要

自然界中微生物多样性的程度在很大程度上仍然未知,这表明可能还有许多有用的产品有待从土壤微生物中鉴定出来。这一见解为重新关注从土壤微生物中寻找新型商业重要产品提供了科学依据。这促使我们通过培养策略来挖掘土壤微生物的代谢潜力。牢记这一点,我们对东加尔各答湿地地区(达帕垃圾填埋区)重要的土壤细菌群落多样性进行了基于培养的调查。我们描述了38株菌株的分离、它们的表型和生化特征,最后通过对聚合酶链反应(PCR)扩增的16S rRNA基因产物进行直接测序进行分子鉴定。我们已经分离并鉴定出能够固氮、产生蛋白酶、纤维素酶、木聚糖酶和淀粉酶等胞外酶以及溶解无机磷酸盐的菌株。一些分离株可以合成胞外杀虫毒素。我们发现分离株的生化和表型行为与使用16S rRNA基因的分子研究之间有很好的相关性。此外,我们的研究结果清楚地表明了东加尔各答湿地地区可培养土壤细菌的组成。

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