Chakraborty Arpita, Bera Amit, Mukherjee Arghya, Basak Pijush, Khan Imroze, Mondal Arindam, Roy Arunava, Bhattacharyya Anish, SenGupta Sohan, Roy Debojyoti, Nag Sudip, Ghosh Abhrajyoti, Chattopadhyay Dhrubajyoti, Bhattacharyya Maitree
Department of Biochemistry, University of Calcutta, University College of Science, 35, Ballygunge Circular Road, Kolkata, 700019, India.
World J Microbiol Biotechnol. 2015 Apr;31(4):593-610. doi: 10.1007/s11274-015-1814-5. Epub 2015 Feb 6.
Mangrove microbial communities and their associated activities have profound impact on biogeochemical cycles. Although microbial composition and structure are known to be influenced by biotic and abiotic factors in the mangrove sediments, finding direct correlations between them remains a challenge. In this study we have explored sediment bacterial diversity of the Sundarbans, a world heritage site using a culture-independent molecular approach. Bacterial diversity was analyzed from three different locations with a history of exposure to differential anthropogenic activities. 16S rRNA gene libraries were constructed and partial sequencing of the clones was performed to identify the microbial strains. We identified bacterial strains known to be involved in a variety of biodegradation/biotransformation processes including hydrocarbon degradation, and heavy metal resistance. Canonical Correspondence Analysis of the environmental and exploratory datasets revealed correlations between the ecological indices associated with pollutant levels and bacterial diversity across the sites. Our results indicate that sites with similar exposure of anthropogenic intervention reflect similar patterns of microbial diversity besides spatial commonalities.
红树林微生物群落及其相关活动对生物地球化学循环有着深远影响。尽管已知红树林沉积物中的微生物组成和结构会受到生物和非生物因素的影响,但找到它们之间的直接关联仍然是一项挑战。在本研究中,我们使用一种不依赖培养的分子方法,探索了世界遗产地孙德尔本斯的沉积物细菌多样性。从三个经历过不同人为活动的地点分析细菌多样性。构建了16S rRNA基因文库,并对克隆进行部分测序以鉴定微生物菌株。我们鉴定出了已知参与多种生物降解/生物转化过程(包括烃类降解和重金属抗性)的细菌菌株。对环境和探索性数据集进行的典范对应分析揭示了与污染物水平相关的生态指数和各地点细菌多样性之间的相关性。我们的结果表明,除了空间共性外,人为干预暴露程度相似的地点反映出相似的微生物多样性模式。