Espinoza-Fonseca L Michel, Kast David, Thomas David D
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA.
Biophys J. 2007 Sep 15;93(6):2083-90. doi: 10.1529/biophysj.106.095802. Epub 2007 Jun 1.
We have performed molecular dynamics simulations of the phosphorylated (at S-19) and the unphosphorylated 25-residue N-terminal phosphorylation domain of the regulatory light chain (RLC) of smooth muscle myosin to provide insight into the structural basis of regulation. This domain does not appear in any crystal structure, so these simulations were combined with site-directed spin labeling to define its structure and dynamics. Simulations were carried out in explicit water at 310 K, starting with an ideal alpha-helix. In the absence of phosphorylation, large portions of the domain (residues S-2 to K-11 and R-16 through Y-21) were metastable throughout the simulation, undergoing rapid transitions among alpha-helix, pi-helix, and turn, whereas residues K-12 to Q-15 remained highly disordered, displaying a turn motif from 1 to 22.5 ns and a random coil pattern from 22.5 to 50 ns. Phosphorylation increased alpha-helical order dramatically in residues K-11 to A-17 but caused relatively little change in the immediate vicinity of the phosphorylation site (S-19). Phosphorylation also increased the overall dynamic stability, as evidenced by smaller temporal fluctuations in the root mean-square deviation. These results on the isolated phosphorylation domain, predicting a disorder-to-order transition induced by phosphorylation, are remarkably consistent with published experimental data involving site-directed spin labeling of the intact RLC bound to the two-headed heavy meromyosin. The simulations provide new insight into structural details not revealed by experiment, allowing us to propose a refined model for the mechanism by which phosphorylation affects the N-terminal domain of the RLC of smooth muscle myosin.
我们对平滑肌肌球蛋白调节轻链(RLC)的磷酸化(S-19位点)和未磷酸化的25个残基的N端磷酸化结构域进行了分子动力学模拟,以深入了解调节的结构基础。该结构域未出现在任何晶体结构中,因此将这些模拟与定点自旋标记相结合来确定其结构和动力学。模拟在310 K的明确水环境中进行,起始结构为理想的α-螺旋。在未磷酸化的情况下,该结构域的大部分(S-2至K-11残基以及R-16至Y-21残基)在整个模拟过程中处于亚稳态,在α-螺旋、π-螺旋和转角之间快速转变,而K-12至Q-15残基则保持高度无序,在1至22.5纳秒呈现转角基序,在22.5至50纳秒呈现无规卷曲模式。磷酸化使K-11至A-17残基的α-螺旋有序性显著增加,但在磷酸化位点(S-19)附近引起的变化相对较小。磷酸化还提高了整体动态稳定性,均方根偏差的较小时间波动证明了这一点。这些关于分离的磷酸化结构域的结果预测了磷酸化诱导的无序到有序转变,与已发表的涉及完整RLC与双头重酶解肌球蛋白结合的定点自旋标记实验数据非常一致。这些模拟为实验未揭示的结构细节提供了新的见解,使我们能够提出一个关于磷酸化影响平滑肌肌球蛋白RLC N端结构域机制的改进模型。