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来自俄克拉荷马州富含硫化物和硫的厌氧佐德莱特温泉的浮霉菌门的系统发育和代谢多样性。

Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma.

作者信息

Elshahed Mostafa S, Youssef Noha H, Luo Qingwei, Najar Fares Z, Roe Bruce A, Sisk Tracy M, Bühring Solveig I, Hinrichs Kai-Uwe, Krumholz Lee R

机构信息

Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA.

出版信息

Appl Environ Microbiol. 2007 Aug;73(15):4707-16. doi: 10.1128/AEM.00591-07. Epub 2007 Jun 1.

Abstract

We investigated the phylogenetic diversity and metabolic capabilities of members of the phylum Planctomycetes in the anaerobic, sulfide-saturated sediments of a mesophilic spring (Zodletone Spring) in southwestern Oklahoma. Culture-independent analyses of 16S rRNA gene sequences generated using Planctomycetes-biased primer pairs suggested that an extremely diverse community of Planctomycetes is present at the spring. Although sequences that are phylogenetically affiliated with cultured heterotrophic Planctomycetes were identified, the majority of the sequences belonged to several globally distributed, as-yet-uncultured Planctomycetes lineages. Using complex organic media (aqueous extracts of the spring sediments and rumen fluid), we isolated two novel strains that belonged to the Pirellula-Rhodopirellula-Blastopirellula clade within the Planctomycetes. The two strains had identical 16S rRNA gene sequences, and their closest relatives were isolates from Kiel Fjord (Germany), Keauhou Beach (HI), a marine aquarium, and tissues of marine organisms (Aplysina sp. sponges and postlarvae of the giant tiger prawn Penaeus monodon). The closest recognized cultured relative of strain Zi62 was Blastopirellula marina (93.9% sequence similarity). Detailed characterization of strain Zi62 revealed its ability to reduce elemental sulfur to sulfide under anaerobic conditions, as well as its ability to produce acids from sugars; both characteristics may potentially allow strain Zi62 to survive and grow in the anaerobic, sulfide- and sulfur-rich environment at the spring source. Overall, this work indicates that anaerobic metabolic abilities are widely distributed among all major Planctomycetes lineages and suggests carbohydrate fermentation and sulfur reduction as possible mechanisms employed by heterotrophic Planctomycetes for growth and survival under anaerobic conditions.

摘要

我们研究了俄克拉何马州西南部一个中温泉(佐德莱顿泉)厌氧、富含硫化物的沉积物中浮霉菌门成员的系统发育多样性和代谢能力。使用偏向浮霉菌门的引物对生成的16S rRNA基因序列的非培养分析表明,该泉中存在一个极其多样的浮霉菌群落。虽然鉴定出了与已培养的异养浮霉菌在系统发育上相关的序列,但大多数序列属于几个全球分布、尚未培养的浮霉菌谱系。我们使用复杂有机培养基(泉沉积物和瘤胃液的水提取物),分离出了两个属于浮霉菌门中皮氏菌 - 红皮氏菌 - 芽皮氏菌分支的新菌株。这两个菌株具有相同的16S rRNA基因序列,它们最亲近的亲属是来自德国基尔峡湾、夏威夷考胡海滩、一个海洋水族馆以及海洋生物组织(Aplysina属海绵和巨型虎虾斑节对虾的后期幼虫)的分离物。菌株Zi62最接近的已确认培养亲属是海洋芽皮氏菌(序列相似性为93.9%)。对菌株Zi62的详细表征揭示了其在厌氧条件下将元素硫还原为硫化物的能力,以及从糖类产生酸的能力;这两个特性可能使菌株Zi62能够在泉源处厌氧、富含硫化物和硫的环境中生存和生长。总体而言,这项工作表明厌氧代谢能力在所有主要浮霉菌谱系中广泛分布,并表明碳水化合物发酵和硫还原是异养浮霉菌在厌氧条件下生长和生存可能采用的机制。

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