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酶反应速率的非阿伦尼乌斯行为的起源。

Origin of the Non-Arrhenius Behavior of the Rates of Enzymatic Reactions.

机构信息

Department of Chemistry, University of Southern California , 3620 McClintock Avenue, Los Angeles, California 90089, United States.

Astex Pharmaceuticals , Cambridge CB4 0QA, United Kingdom.

出版信息

J Phys Chem B. 2017 Jul 13;121(27):6520-6526. doi: 10.1021/acs.jpcb.7b03698. Epub 2017 Jul 5.

Abstract

The origin of the non-Arrhenius behavior of the rate constant for hydride transfer enzymatic reactions has been a puzzling problem since its initial observation. This effect has been used originally to support the idea that enzymes work by dynamical effects and more recently to suggest an entropy funnel model. Our analysis, however, has advanced the idea that the reason for the non-Arrhenius trend reflects the temperature dependence of the rearrangements of the protein polar groups in response to the change in the charge distribution of the reacting system during the transition from the ground state (GS) to the transition state (TS). Here we examine the validity of our early proposal by simulating the catalytic reaction of alcohol dehydrogenase (ADH) and determine the microscopic origin of the entropic and enthalpic contributions to the activation barrier. The corresponding analysis establishes the origin of the non-Arrhenius behaviors and quantifies our original suggestion that the classical effect is due to the entropic contributions of the environment. We also find that the quantum effects reflect in part the temperature dependence of the donor-acceptor distance.

摘要

自最初观察到氢化物转移酶反应速率常数的非阿伦尼乌斯行为以来,其起源一直是一个令人困惑的问题。该效应最初被用来支持酶通过动力学效应起作用的观点,最近又被用来提出熵漏斗模型。然而,我们的分析进一步提出,非阿伦尼乌斯趋势的原因反映了蛋白质极性基团在反应系统的电荷分布发生变化时,在从基态(GS)到过渡态(TS)的转变过程中重新排列的温度依赖性。在这里,我们通过模拟醇脱氢酶(ADH)的催化反应来检验我们早期的提议的有效性,并确定对活化能的熵和焓贡献的微观起源。相应的分析确定了非阿伦尼乌斯行为的起源,并量化了我们最初的建议,即经典效应是由于环境的熵贡献。我们还发现,量子效应部分反映了供体-受体距离的温度依赖性。

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