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在传统核小体而非变体H2A.Bbd核小体中,碱基切除修复需要ATP依赖的染色质重塑。

ATP-dependent chromatin remodeling is required for base excision repair in conventional but not in variant H2A.Bbd nucleosomes.

作者信息

Menoni Hervé, Gasparutto Didier, Hamiche Ali, Cadet Jean, Dimitrov Stefan, Bouvet Philippe, Angelov Dimitar

机构信息

Laboratoire Joliot-Curie, CNRS-USR3010, Ecole Normale Supérieure de Lyon, 69364 Lyon Cedex 7, France.

出版信息

Mol Cell Biol. 2007 Sep;27(17):5949-56. doi: 10.1128/MCB.00376-07. Epub 2007 Jun 25.

Abstract

In eukaryotes, base excision repair (BER) is responsible for the repair of oxidatively generated lesions. The mechanism of BER on naked DNA substrates has been studied in detail, but how it operates on chromatin remains unclear. Here we have studied the mechanism of BER by introducing a single 8-oxo-7,8-dihydroguanine (8-oxoG) lesion in the DNA of reconstituted positioned conventional and histone variant H2A.Bbd nucleosomes. We found that 8-oxoguanine DNA glycosylase, apurinic/apyrimidinic endonuclease, and polymerase beta activities were strongly reduced in both types of nucleosomes. In conventional nucleosomes SWI/SNF stimulated the processing of 8-oxoG by each one of the three BER repair factors to efficiencies similar to those for naked DNA. Interestingly, SWI/SNF-induced remodeling, but not mobilization of conventional nucleosomes, was required to achieve this effect. A very weak effect of SWI/SNF on the 8-oxoG BER removal in H2A.Bbd histone variant nucleosomes was observed. The possible implications of our data for the understanding of in vivo mechanisms of BER are discussed.

摘要

在真核生物中,碱基切除修复(BER)负责修复氧化产生的损伤。BER在裸露DNA底物上的机制已得到详细研究,但它在染色质上如何运作仍不清楚。在这里,我们通过在重组定位的常规核小体和组蛋白变体H2A.Bbd核小体的DNA中引入单个8-氧代-7,8-二氢鸟嘌呤(8-oxoG)损伤来研究BER的机制。我们发现,在这两种类型的核小体中,8-氧代鸟嘌呤DNA糖基化酶、脱嘌呤/脱嘧啶内切核酸酶和聚合酶β的活性都大大降低。在常规核小体中,SWI/SNF通过三种BER修复因子中的每一种刺激8-oxoG的加工,使其效率与裸露DNA相似。有趣的是,要实现这种效果需要SWI/SNF诱导的重塑,而不是常规核小体的移动。观察到SWI/SNF对H2A.Bbd组蛋白变体核小体中8-oxoG BER去除的影响非常微弱。我们讨论了这些数据对理解BER体内机制的可能意义。

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本文引用的文献

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