Meyers Gregor
Institut für Immunologie, Friedrich-Loeffler-Institut, Paul-Ehrlich-Strasse 28, D-72076 Tübingen, Germany.
J Virol. 2007 Sep;81(18):9623-32. doi: 10.1128/JVI.00771-07. Epub 2007 Jun 27.
The calicivirus minor capsid protein VP2 is expressed via reinitiation of protein synthesis after termination of translation of the preceding VP1 gene. A sequence element of about 80 nucleotides denoted "termination upstream ribosomal binding site" (TURBS) (25) is crucial for reinitiation. Deletion mapping in the TURBS of a rabbit calicivirus identified two short sequence motifs that were crucial for VP2 expression. Motif 1 is conserved among caliciviruses and is complementary to a sequence in the 18S rRNA. Single-residue exchanges in this motif severely impaired reinitiation when they affected the putative rRNA binding, whereas an exchange preserving complementarity had only a minor effect. Single exchanges in motif 2 were rather well tolerated, but the introduction of double exchanges almost blocked VP2 expression. In contrast, the deletion analyses showed that the RNA between the two motifs is of minor importance. The distance between motif 2 and the start site was found to be important, since deletions of increasing length in this sequence or upstream positioning of the start codon reduced VP2 expression stepwise to low levels, whereas multiple-nucleotide exchanges in this region were tolerated. The low flexibility of the arrangement of TURBS motif 2 and the start codon stand in marked contrast to the requirements with regard to the location of the stop codon of the preceding VP1 gene, which could be moved far downstream with continuous reduction, but without loss, of VP2 translation. The sequence mapping resulted in a refined model of the reinitiation mechanism leading to VP2 expression.
杯状病毒的次要衣壳蛋白VP2是在前一个VP1基因翻译终止后通过蛋白质合成的重新起始来表达的。一个约80个核苷酸的序列元件,称为“终止上游核糖体结合位点”(TURBS)(25),对重新起始至关重要。对兔杯状病毒TURBS进行缺失作图,确定了两个对VP2表达至关重要的短序列基序。基序1在杯状病毒中是保守的,并且与18S rRNA中的一个序列互补。当该基序中的单残基交换影响推定的rRNA结合时,会严重损害重新起始,而保持互补性的交换只有轻微影响。基序2中的单交换相当耐受,但引入双交换几乎阻断了VP2的表达。相比之下,缺失分析表明两个基序之间的RNA重要性较低。发现基序2与起始位点之间的距离很重要,因为该序列中长度增加的缺失或起始密码子的上游定位会使VP2表达逐步降低到低水平,而该区域的多核苷酸交换是可以耐受的。TURBS基序2和起始密码子排列的低灵活性与前一个VP1基因终止密码子位置的要求形成鲜明对比,前一个VP1基因的终止密码子可以向下游移动很远,同时VP2翻译持续减少但不会丧失。序列作图产生了一个导致VP2表达的重新起始机制的精细模型。