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星际空间中的腺嘌呤合成:单环HCN五聚体的益生元嘧啶环形成机制。

Adenine synthesis in interstellar space: mechanisms of prebiotic pyrimidine-ring formation of monocyclic HCN-pentamers.

作者信息

Glaser Rainer, Hodgen Brian, Farrelly Dean, McKee Elliot

机构信息

Department of Chemistry, University of Missouri-Columbia, Columbia, Missouri 65211, USA.

出版信息

Astrobiology. 2007 Jun;7(3):455-70. doi: 10.1089/ast.2006.0112.

DOI:10.1089/ast.2006.0112
PMID:17630841
Abstract

The question whether the nucleobases can be synthesized in interstellar space is of fundamental significance in considerations of the origin of life. Adenine is formally the HCN pentamer, and experiments have demonstrated that adenine is formed under certain conditions by HCN pentamerization in gas, liquid, and condensed phases. Most mechanistic proposals invoke the intermediacy of the HCN tetramer AICN (4), and it is thought that adenine synthesis is completed by addition of the 5(th) HCN to 4 to form amidine 5 and subsequent pyrimidine cyclization. In this context, we have been studying the mechanism for prebiotic pyrimidine-ring formation of monocyclic HCN-pentamers with ab initio electronic structure theory. The calculations model gas phase chemistry, and the results primarily inform discussions of adenine synthesis in interstellar space. Purine formation requires tautomerization of 5 to the conjugated amidine 6 (via hydrogen-tunneling, thermally with H(+) -catalysis, or by photolysis) or to keteneimine 7 (by photolysis). It was found that 5-(N'-formamidinyl)-1H-imidazole-4-carbonitrile (6) can serve as a substrate for proton-catalyzed purine formation under photolytic conditions and N-(4-(iminomethylene)-1H-imidazol-5(4H)-ylidene)formamidine (7) can serve as a substrate for uncatalyzed purine formation under photolytic conditions. The absence of any sizeable activation barrier for the cyclization of 7 to the (Z)-imino form of 9H-adenine (Z)-2 is quite remarkable, and it is this feature that allows for the formation of the purine skeleton from 7 without any further activation.

摘要

核碱基是否能在星际空间中合成这一问题,在生命起源的考量中具有根本重要性。从形式上看,腺嘌呤是HCN五聚体,并且实验已证明,在气体、液体和凝聚相中,在某些条件下腺嘌呤可通过HCN五聚反应形成。大多数机理推测涉及HCN四聚体AICN(4)作为中间体,并且认为腺嘌呤的合成是通过将第5个HCN加到4上形成脒5,随后进行嘧啶环化来完成的。在此背景下,我们一直使用从头算电子结构理论研究单环HCN五聚体的益生元嘧啶环形成机理。这些计算模拟气相化学过程,其结果主要为星际空间中腺嘌呤合成的讨论提供依据。嘌呤的形成需要将5互变异构化为共轭脒6(通过氢隧穿、H⁺催化热反应或光解)或互变异构化为乙烯亚胺7(通过光解)。研究发现,5-(N'-甲脒基)-1H-咪唑-4-甲腈(6)可作为光解条件下质子催化嘌呤形成的底物,而N-(4-(亚氨基亚甲基)-1H-咪唑-5(4H)-亚基)甲脒(7)可作为光解条件下非催化嘌呤形成的底物。7环化为9H-腺嘌呤(Z)-2的(Z)-亚氨基形式时不存在任何可观的活化能垒,这一点相当引人注目,正是这一特征使得能够从7形成嘌呤骨架而无需任何进一步的活化。

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