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基于甲酰胺的碱基前体合成:一种动力学可及的反应途径。

Formamide-based prebiotic synthesis of nucleobases: a kinetically accessible reaction route.

机构信息

Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, CZ-61265 Brno, Czech Republic.

出版信息

J Phys Chem A. 2012 Jan 12;116(1):720-6. doi: 10.1021/jp209886b. Epub 2011 Dec 14.

DOI:10.1021/jp209886b
PMID:22129168
Abstract

Synthesis of nucleobases in nonaqueous environments is an alternative way for the emergence of terrestrial life, which could solve the fundamental problem connected to the hydrolytic instability of nucleic acid components in an aqueous environment. In this contribution, we present a plausible reaction route for the prebiotic synthesis of nucleobases in formamide, which does not require participation of the formamide trimer and aminoimidazole-carbonitrile intermediates. The computed activation energy of the proposed pathway is noticeably higher than that of the HCN-based synthetic route, but it is still feasible under the experimental conditions of the Saladino synthesis. We show that, albeit both the pyrimidine and purine ring formation utilizes the undissociated form of formamide, the dehydration product of formamide, HCN, may also play a key role in the mechanism. The rate determining step of the entire reaction path is the cyclization of the diaza-pentanimine precursor. The subsequent formation of the imidazole ring proceeds with a moderate activation energy. Our calculations thus demonstrate that the experimentally suggested reaction path without the involvement of aminoimidazole-carbonitrile intermediates is also a viable alternative for the nonaqueous synthesis of nucleobases.

摘要

非水环境中核苷的合成是地球生命出现的另一种方式,它可以解决核酸成分在水相环境中水解不稳定的根本问题。在本研究中,我们提出了一种在甲酰胺中进行前生物合成核苷的合理反应途径,该途径不需要三聚甲酰胺和氨基咪唑-腈中间体的参与。所提出途径的计算活化能明显高于基于 HCN 的合成途径,但在 Saladino 合成的实验条件下仍然可行。我们表明,尽管嘧啶和嘌呤环的形成都利用了甲酰胺的未离解形式,但甲酰胺的脱水产物 HCN 也可能在该机制中发挥关键作用。整个反应途径的速控步骤是二氮杂戊烯前体的环化。随后咪唑环的形成需要中等的活化能。因此,我们的计算表明,实验中提出的不涉及氨基咪唑-腈中间体的反应途径也是非水相合成核苷的另一种可行选择。

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