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地球上最古老冰层中的化石基因与微生物。

Fossil genes and microbes in the oldest ice on earth.

作者信息

Bidle Kay D, Lee Sanghoon, Marchant David R, Falkowski Paul G

机构信息

Environmental Biophysics and Molecular Ecology Program, Institute of Marine and Coastal Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA.

出版信息

Proc Natl Acad Sci U S A. 2007 Aug 14;104(33):13455-60. doi: 10.1073/pnas.0702196104. Epub 2007 Aug 8.

Abstract

Although the vast majority of ice that formed on the Antarctic continent over the past 34 million years has been lost to the oceans, pockets of ancient ice persist in the Dry Valleys of the Transantarctic Mountains. Here we report on the potential metabolic activity of microbes and the state of community DNA in ice derived from Mullins and upper Beacon Valleys. The minimum age of the former is 100 ka, whereas that of the latter is approximately 8 Ma, making it the oldest known ice on Earth. In both samples, radiolabeled substrates were incorporated into macromolecules, and microbes grew in nutrient-enriched meltwaters, but metabolic activity and cell viability were critically compromised with age. Although a 16S rDNA-based community reconstruction suggested relatively low bacterial sequence diversity in both ice samples, metagenomic analyses of community DNA revealed many diverse orthologs to extant metabolic genes. Analyses of five ice samples, spanning the last 8 million years in this region, demonstrated an exponential decline in the average community DNA size with a half-life of approximately 1.1 million years, thereby constraining the geological preservation of microbes in icy environments and the possible exchange of genetic material to the oceans.

摘要

尽管在过去3400万年里在南极大陆形成的绝大部分冰都已流入海洋,但在横贯南极山脉的干谷中仍留存着一些古老的冰块。在此,我们报告了取自穆林斯谷和比肯上谷的冰中微生物的潜在代谢活性以及群落DNA的状态。前者的最小年龄为10万年,而后者约为800万年,使其成为地球上已知最古老的冰。在这两个样本中,放射性标记的底物都被整合到了大分子中,微生物在营养丰富的融水中生长,但代谢活性和细胞活力随着年代的久远而严重受损。尽管基于16S rDNA的群落重建表明这两个冰样本中的细菌序列多样性相对较低,但对群落DNA的宏基因组分析揭示了许多与现存代谢基因不同的直系同源基因。对该地区过去800万年的五个冰样本进行的分析表明,平均群落DNA大小呈指数下降,半衰期约为110万年,从而限制了微生物在冰冷环境中的地质保存以及向海洋进行遗传物质交换的可能性。

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