Burrage Kevin, Hancock John, Leier André, Nicolau Dan V
The Advanced Computational Modelling Centre and the ARC Centre in Bioinformatics, The University of Queensland, Brisbane 4072, Australia.
Brief Bioinform. 2007 Jul;8(4):234-44. doi: 10.1093/bib/bbm033. Epub 2007 Aug 9.
One of the most important aspects of Computational Cell Biology is the understanding of the complicated dynamical processes that take place on plasma membranes. These processes are often so complicated that purely temporal models cannot always adequately capture the dynamics. On the other hand, spatial models can have large computational overheads. In this article, we review some of these issues with respect to chemistry, membrane microdomains and anomalous diffusion and discuss how to select appropriate modelling and simulation paradigms based on some or all the following aspects: discrete, continuous, stochastic, delayed and complex spatial processes.
计算细胞生物学最重要的方面之一是理解发生在质膜上的复杂动态过程。这些过程通常非常复杂,以至于纯粹的时间模型并不总能充分捕捉其动态。另一方面,空间模型可能会有很大的计算开销。在本文中,我们回顾了一些关于化学、膜微区和反常扩散的问题,并讨论如何基于以下部分或全部方面选择合适的建模和模拟范式:离散、连续、随机、延迟和复杂空间过程。