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用于体内反应建模的随机方法。

Stochastic approaches for modelling in vivo reactions.

作者信息

Turner T E, Schnell S, Burrage K

机构信息

Oxford Centre for Industrial and Applied Mathematics, Mathematical Institute, 24-29 St. Giles', Oxford OX1 3LB, UK.

出版信息

Comput Biol Chem. 2004 Jul;28(3):165-78. doi: 10.1016/j.compbiolchem.2004.05.001.

Abstract

In recent years, stochastic modelling has emerged as a physically more realistic alternative for modelling in vivo reactions. There are numerous stochastic approaches available in the literature; most of these assume that observed random fluctuations are a consequence of the small number of reacting molecules. We review some important developments of the stochastic approach and consider its suitability for modelling intracellular reactions. We then describe recent efforts to include the fluctuation effects caused by the structural organisation of the cytoplasm and the limited diffusion of molecules due to macromolecular crowding.

摘要

近年来,随机建模已成为一种在物理上更符合实际的体内反应建模替代方法。文献中有许多可用的随机方法;其中大多数假设观察到的随机波动是由于反应分子数量较少所致。我们回顾了随机方法的一些重要进展,并考虑其对细胞内反应建模的适用性。然后,我们描述了最近为纳入由细胞质的结构组织引起的波动效应以及由于大分子拥挤导致的分子有限扩散所做的努力。

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