Keyamura Kenji, Fujikawa Norie, Ishida Takuma, Ozaki Shogo, Su'etsugu Masayuki, Fujimitsu Kazuyuki, Kagawa Wataru, Yokoyama Shigeyuki, Kurumizaka Hitoshi, Katayama Tsutomu
Department of Molecular Biology, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Genes Dev. 2007 Aug 15;21(16):2083-99. doi: 10.1101/gad.1561207.
Escherichia coli DiaA is a DnaA-binding protein that is required for the timely initiation of chromosomal replication during the cell cycle. In this study, we determined the crystal structure of DiaA at 1.8 A resolution. DiaA forms a homotetramer consisting of a symmetrical pair of homodimers. Mutational analysis revealed that the DnaA-binding activity and formation of homotetramers are required for the stimulation of initiation by DiaA. DiaA tetramers can bind multiple DnaA molecules simultaneously. DiaA stimulated the assembly of multiple DnaA molecules on oriC, conformational changes in ATP-DnaA-specific initiation complexes, and unwinding of oriC duplex DNA. The mutant DiaA proteins are defective in these stimulations. DiaA associated also with ADP-DnaA, and stimulated the assembly of inactive ADP-DnaA-oriC complexes. Specific residues in the putative phosphosugar-binding motif of DiaA were required for the stimulation of initiation and formation of ATP-DnaA-specific-oriC complexes. Our data indicate that DiaA regulates initiation by a novel mechanism, in which DiaA tetramers most likely bind to multiple DnaA molecules and stimulate the assembly of specific ATP-DnaA-oriC complexes. These results suggest an essential role for DiaA in the promotion of replication initiation in a cell cycle coordinated manner.
大肠杆菌DiaA是一种与DnaA结合的蛋白质,在细胞周期中染色体复制的适时起始过程中是必需的。在本研究中,我们确定了DiaA的晶体结构,分辨率为1.8埃。DiaA形成一个同四聚体,由一对对称的同二聚体组成。突变分析表明,DiaA刺激起始所必需的是其与DnaA的结合活性和同四聚体的形成。DiaA四聚体可以同时结合多个DnaA分子。DiaA刺激多个DnaA分子在oriC上的组装、ATP-DnaA特异性起始复合物的构象变化以及oriC双链DNA的解旋。突变的DiaA蛋白在这些刺激过程中存在缺陷。DiaA也与ADP-DnaA结合,并刺激无活性的ADP-DnaA-oriC复合物的组装。DiaA假定的磷酸糖结合基序中的特定残基是刺激起始和形成ATP-DnaA特异性oriC复合物所必需的。我们的数据表明,DiaA通过一种新机制调节起始,其中DiaA四聚体很可能与多个DnaA分子结合,并刺激特定的ATP-DnaA-oriC复合物的组装。这些结果表明DiaA在以细胞周期协调的方式促进复制起始中起着至关重要的作用。