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拓展对蛋白质的理解——蛋白质数据库综述

Stretching to understand proteins - a survey of the protein data bank.

作者信息

Sułkowska Joanna I, Cieplak Marek

机构信息

Institute of Physics, Polish Academy of Sciences, Warsaw, Poland.

出版信息

Biophys J. 2008 Jan 1;94(1):6-13. doi: 10.1529/biophysj.107.105973. Epub 2007 Aug 17.

Abstract

We make a survey of resistance of 7510 proteins to mechanical stretching at constant speed as studied within a coarse-grained molecular dynamics model. We correlate the maximum force of resistance with the native structure, predict proteins which should be especially strong, and identify the nature of their force clamps.

摘要

我们在粗粒度分子动力学模型中,对7510种蛋白质在恒速下的机械拉伸抗性进行了研究。我们将最大抗性力与天然结构相关联,预测哪些蛋白质应该特别强,并确定其力钳的性质。

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本文引用的文献

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Stretching of proteins in a uniform flow.
J Chem Phys. 2006 Oct 28;125(16):164903. doi: 10.1063/1.2358346.
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Nanospring behaviour of ankyrin repeats.锚蛋白重复序列的纳米弹簧行为。
Nature. 2006 Mar 9;440(7081):246-9. doi: 10.1038/nature04437. Epub 2006 Jan 15.
6
Temperature softening of a protein in single-molecule experiments.单分子实验中蛋白质的温度软化
J Mol Biol. 2005 Nov 25;354(2):497-503. doi: 10.1016/j.jmb.2005.09.070. Epub 2005 Oct 10.
9
Mechanically unfolding the small, topologically simple protein L.机械展开小型、拓扑结构简单的蛋白质L。
Biophys J. 2005 Jul;89(1):506-19. doi: 10.1529/biophysj.105.061465. Epub 2005 Apr 29.
10
Mechanical properties of the domains of titin in a Go-like model.
J Chem Phys. 2005 Feb 1;122(5):54906. doi: 10.1063/1.1839572.

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