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血红素加氧酶中的氢键网络还作为酶动力学的调节剂发挥作用:破坏铜绿假单胞菌血红素加氧酶中的氢键网络后出现的混沌运动。

The hydrogen-bonding network in heme oxygenase also functions as a modulator of enzyme dynamics: chaotic motions upon disrupting the H-bond network in heme oxygenase from Pseudomonas aeruginosa.

作者信息

Rodríguez Juan Carlos, Zeng Yuhong, Wilks Angela, Rivera Mario

机构信息

Ralph N. Adams Institute for Bioanalytical Chemistry and Department of Chemistry, University of Kansas, Multidisciplinary Research Building, 2030 Becker Drive, Room 220 E, Lawrence, Kansas 66047, USA.

出版信息

J Am Chem Soc. 2007 Sep 26;129(38):11730-42. doi: 10.1021/ja072405q. Epub 2007 Sep 1.

Abstract

Relaxation compensated Carr-Purcell-Meiboom-Gill (rc-CPMG) NMR experiments have been used to investigate micros-ms motions in heme oxygenase from Pseudomonas aeruginosa (pa-HO) in its ferric state, inhibited by CN- (pa-HO-CN) and N3- (pa-HO-N3), and in its ferrous state, inhibited by CO (pa-HO-CO). Comparative analysis of the data from the three forms indicates that the nature of the coordinated distal ligand affects the micros-ms conformational freedom of the polypeptide in regions of the enzyme far removed from the heme iron and distal ligand. Interpretation of the dynamical information in the context of the crystal structure of resting state pa-HO shows that residues involved in the network of structural hydrogen-bonded waters characteristic of HOs undergo micros-ms motions in pa-HO-CN, which was studied as a model of the highly paramagnetic S = 5/2 resting state form. In comparison, similar motions are suppressed in the pa-HO-CO and pa-HO-N3 complexes, which were studied as mimics of the obligatory oxyferrous and ferric hydroperoxide intermediates, respectively, in the catalytic cycle of heme degradation. These findings suggest that in addition to proton delivery to the nascent Fe(III)-OO(-) intermediate during catalysis, the hydrogen-bonding network serves two additional roles: (i) propagate the electronic state (reactive state) in each of the distinct steps of the catalytic cycle to key but remote sections of the polypeptide via small rearrangements in the network of hydrogen bonds and (ii) modulate the conformational freedom of the enzyme, thus allowing it to adapt to the demanding changes in axial coordination state and substrate transformations that take place during the catalytic cycle. This idea was probed by disrupting the hydrogen-bonding network in pa-HO by replacing R80 with L. NMR spectroscopic studies conducted with R80L-pa-HO-N3 and R80L-pa-HO-CO revealed that the mutant exhibits nearly global conformational disorder, which is absent in the equivalent complexes of the wild type enzyme. The "chaotic" disorder in the R80L mutant is likely related to its significantly lower efficiency to hydroxylate heme in the presence of H2O2, relative to the wild type enzyme.

摘要

弛豫补偿的 Carr-Purcell-Meiboom-Gill(rc-CPMG)核磁共振实验已被用于研究铜绿假单胞菌血红素加氧酶(pa-HO)处于铁离子状态时,被 CN⁻(pa-HO-CN)和 N₃⁻(pa-HO-N₃)抑制的情况,以及处于亚铁离子状态时,被 CO(pa-HO-CO)抑制的情况。对这三种形式的数据进行比较分析表明,配位远端配体的性质会影响酶中远离血红素铁和远端配体区域的多肽的微秒至毫秒级构象自由度。在静止状态 pa-HO 的晶体结构背景下对动力学信息进行解释表明,参与 HO 特有的结构氢键水网络的残基在 pa-HO-CN 中会发生微秒至毫秒级运动,pa-HO-CN 被作为高顺磁性 S = 5/2 静止状态形式的模型进行研究。相比之下,在 pa-HO-CO 和 pa-HO-N3 复合物中,类似的运动受到抑制,pa-HO-CO 和 pa-HO-N3 分别被作为血红素降解催化循环中 obligatory 氧亚铁和铁过氧化氢中间体的模拟物进行研究。这些发现表明,除了在催化过程中向新生的 Fe(III)-OO⁻中间体传递质子外,氢键网络还起到另外两个作用:(i)通过氢键网络中的小重排在催化循环的每个不同步骤中将电子状态(反应状态)传播到多肽的关键但遥远的部分;(ii)调节酶的构象自由度,从而使其能够适应催化循环中轴向配位状态和底物转化的严格变化。通过用 L 取代 R80 破坏 pa-HO 中的氢键网络来探究这一想法。用 R80L-pa-HO-N3 和 R80L-pa-HO-CO 进行的核磁共振光谱研究表明,该突变体表现出几乎全局的构象紊乱,而野生型酶的等效复合物中不存在这种情况。R80L 突变体中的“混沌”紊乱可能与其在 H₂O₂存在下相对于野生型酶显著较低的血红素羟基化效率有关。

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