Yoon Jung-Hoon, Kang So-Jung, Park Sooyeon, Oh Tae-Kwang
Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yusong, Taejon, Korea.
Int J Syst Evol Microbiol. 2007 Sep;57(Pt 9):2089-2095. doi: 10.1099/ijs.0.65146-0.
Two Gram-negative, non-motile, pleomorphic bacterial strains, DS-40(T) and DS-45(T), were isolated from a soil sample collected from Dokdo, Korea, and their exact taxonomic positions were investigated by using a polyphasic approach. Strains DS-40(T) and DS-45(T) grew optimally at 25 degrees C and pH 6.5-7.5 in the presence of 0-1.0 % (w/v) NaCl. They contained MK-7 as the predominant menaquinone and possessed iso-C(15 : 0), iso-C(17 : 0) 3-OH and summed feature 3 (C(16 : 1)omega7c and/or iso-C(15 : 0) 2-OH) as the major fatty acids. The DNA G+C contents of strains DS-40(T) and DS-45(T) were 36.0 and 36.8 mol%, respectively. Strains DS-40(T) and DS-45(T) shared a 16S rRNA gene sequence similarity of 96.7 % and demonstrated a mean DNA-DNA relatedness level of 12 %. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strains DS-40(T) and DS-45(T) were most closely phylogenetically affiliated with the genus Pedobacter of the family Sphingobacteriaceae. Strains DS-40(T) and DS-45(T) exhibited 16S rRNA gene sequence similarity values of 91.4-93.7 and 89.9-91.6 % with respect to the type strains of Pedobacter and Sphingobacterium species, respectively. Phenotypic and chemotaxonomic properties, together with the phylogenetic data, support the assignment of strains DS-40(T) and DS-45(T) as two distinct species within the genus Pedobacter. On the basis of phenotypic, phylogenetic and genetic data, strains DS-40(T) and DS-45(T) represent two novel species of the genus Pedobacter, for which the names Pedobacter lentus sp. nov. and Pedobacter terricola sp. nov. are proposed, respectively. The respective type strains are DS-40(T) (=KCTC 12875(T)=JCM 14593(T)) and DS-45(T) (=KCTC 12876(T)=JCM 14594(T)).
从韩国独岛采集的土壤样本中分离出两株革兰氏阴性、无运动性、多形态的细菌菌株DS-40(T)和DS-45(T),并采用多相分类法研究它们的确切分类地位。菌株DS-40(T)和DS-45(T)在0-1.0%(w/v)NaCl存在的情况下,于25℃和pH 6.5-7.5条件下生长最佳。它们以MK-7作为主要的甲基萘醌,主要脂肪酸为异-C(15 : 0)、异-C(17 : 0) 3-OH和总和特征3(C(16 : 1)ω7c和/或异-C(15 : 0) 2-OH)。菌株DS-40(T)和DS-45(T)的DNA G+C含量分别为36.0和36.8 mol%。菌株DS-40(T)和DS-45(T)的16S rRNA基因序列相似性为96.7%,平均DNA-DNA相关性水平为12%。基于16S rRNA基因序列的系统发育分析表明,菌株DS-40(T)和DS-45(T)在系统发育上与鞘脂杆菌科的Pedobacter属关系最为密切。菌株DS-40(T)和DS-45(T)与Pedobacter属和鞘脂杆菌属模式菌株的16S rRNA基因序列相似性值分别为91.4-93.7%和89.9-91.6%。表型和化学分类学特性以及系统发育数据支持将菌株DS-40(T)和DS-45(T)归为Pedobacter属内的两个不同物种。基于表型、系统发育和遗传数据,菌株DS-40(T)和DS-45(T)代表Pedobacter属的两个新物种,分别命名为缓生Pedobacter菌(Pedobacter lentus sp. nov.)和土生Pedobacter菌(Pedobacter terricola sp. nov.)。各自的模式菌株分别为DS-40(T)(=KCTC 12875(T)=JCM 14593(T))和DS-45(T)(=KCTC 12876(T)=JCM 14594(T))。