Suppr超能文献

对具有反常扩散的细胞进行采样——迟缓现象的发现。

Sampling the cell with anomalous diffusion - the discovery of slowness.

作者信息

Guigas Gernot, Weiss Matthias

机构信息

Cellular Biophysics Group (BIOMS), German Cancer Research Center, Heidelberg, Germany.

出版信息

Biophys J. 2008 Jan 1;94(1):90-4. doi: 10.1529/biophysj.107.117044. Epub 2007 Sep 7.

Abstract

Diffusion-mediated searching for interaction partners is an ubiquitous process in cell biology. Transcription factors, for example, search specific DNA sequences, signaling proteins aim at interacting with specific cofactors, and peripheral membrane proteins try to dock to membrane domains. Brownian motion, however, is affected by molecular crowding that induces anomalous diffusion (so-called subdiffusion) of proteins and larger structures, thereby compromising diffusive transport and the associated sampling processes. Contrary to the naive expectation that subdiffusion obstructs cellular processes, we show here by computer simulations that subdiffusion rather increases the probability of finding a nearby target. Consequently, important events like protein complex formation and signal propagation are enhanced as compared to normal diffusion. Hence, cells indeed benefit from their crowded internal state and the associated anomalous diffusion.

摘要

在细胞生物学中,扩散介导的寻找相互作用伙伴是一个普遍存在的过程。例如,转录因子寻找特定的DNA序列,信号蛋白旨在与特定的辅因子相互作用,而外周膜蛋白则试图对接至膜结构域。然而,布朗运动受到分子拥挤的影响,分子拥挤会诱导蛋白质和更大结构的反常扩散(即所谓的亚扩散),从而损害扩散运输及相关的采样过程。与亚扩散会阻碍细胞过程这种天真的预期相反,我们在此通过计算机模拟表明,亚扩散反而增加了找到附近目标的概率。因此,与正常扩散相比,诸如蛋白质复合物形成和信号传播等重要事件得到了增强。所以,细胞确实受益于其拥挤的内部状态及相关的反常扩散。

相似文献

4
Diffusion in correlated random potentials, with applications to DNA.关联随机势场中的扩散及其在DNA中的应用。
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Jun;69(6 Pt 1):061903. doi: 10.1103/PhysRevE.69.061903. Epub 2004 Jun 1.
10

引用本文的文献

10
Trajectories in nanotechnology: embracing complexity, seeking analogies.纳米技术的轨迹:拥抱复杂性,寻求类比。
Drug Deliv Transl Res. 2021 Apr;11(2):334-340. doi: 10.1007/s13346-020-00877-3. Epub 2021 Jan 28.

本文引用的文献

2
Subdiffusion and weak ergodicity breaking in the presence of a reactive boundary.存在反应性边界时的亚扩散与弱遍历性破缺
Phys Rev Lett. 2007 May 18;98(20):200603. doi: 10.1103/PhysRevLett.98.200603. Epub 2007 May 16.
3
Probing the nanoscale viscoelasticity of intracellular fluids in living cells.探测活细胞内细胞液的纳米级粘弹性。
Biophys J. 2007 Jul 1;93(1):316-23. doi: 10.1529/biophysj.106.099267. Epub 2007 Apr 6.
7
8
Physical nature of bacterial cytoplasm.细菌细胞质的物理性质。
Phys Rev Lett. 2006 Mar 10;96(9):098102. doi: 10.1103/PhysRevLett.96.098102.
9
Anomalous diffusion of proteins due to molecular crowding.由于分子拥挤导致的蛋白质异常扩散。
Biophys J. 2005 Nov;89(5):2960-71. doi: 10.1529/biophysj.104.051078. Epub 2005 Aug 19.
10
Forecast and control of epidemics in a globalized world.全球化世界中的疫情预测与防控
Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15124-9. doi: 10.1073/pnas.0308344101. Epub 2004 Oct 11.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验