Guigas Gernot, Weiss Matthias
Cellular Biophysics Group (BIOMS), German Cancer Research Center, Heidelberg, Germany.
Biophys J. 2008 Jan 1;94(1):90-4. doi: 10.1529/biophysj.107.117044. Epub 2007 Sep 7.
Diffusion-mediated searching for interaction partners is an ubiquitous process in cell biology. Transcription factors, for example, search specific DNA sequences, signaling proteins aim at interacting with specific cofactors, and peripheral membrane proteins try to dock to membrane domains. Brownian motion, however, is affected by molecular crowding that induces anomalous diffusion (so-called subdiffusion) of proteins and larger structures, thereby compromising diffusive transport and the associated sampling processes. Contrary to the naive expectation that subdiffusion obstructs cellular processes, we show here by computer simulations that subdiffusion rather increases the probability of finding a nearby target. Consequently, important events like protein complex formation and signal propagation are enhanced as compared to normal diffusion. Hence, cells indeed benefit from their crowded internal state and the associated anomalous diffusion.
在细胞生物学中,扩散介导的寻找相互作用伙伴是一个普遍存在的过程。例如,转录因子寻找特定的DNA序列,信号蛋白旨在与特定的辅因子相互作用,而外周膜蛋白则试图对接至膜结构域。然而,布朗运动受到分子拥挤的影响,分子拥挤会诱导蛋白质和更大结构的反常扩散(即所谓的亚扩散),从而损害扩散运输及相关的采样过程。与亚扩散会阻碍细胞过程这种天真的预期相反,我们在此通过计算机模拟表明,亚扩散反而增加了找到附近目标的概率。因此,与正常扩散相比,诸如蛋白质复合物形成和信号传播等重要事件得到了增强。所以,细胞确实受益于其拥挤的内部状态及相关的反常扩散。