Suppr超能文献

病毒出现的进化遗传学。

The evolutionary genetics of viral emergence.

作者信息

Holmes E C, Drummond A J

机构信息

Center for Infectious Disease Dynamics, Department of Biology, Mueller Laboratory, The Pennsylvania State University, University Park, PA 16802, USA.

出版信息

Curr Top Microbiol Immunol. 2007;315:51-66. doi: 10.1007/978-3-540-70962-6_3.

Abstract

Despite the wealth of data describing the ecological factors that underpin viral emergence, little is known about the evolutionary processes that allow viruses to jump species barriers and establish productive infections in new hosts. Understanding the evolutionary basis to virus emergence is therefore a key research goal and many of the debates in this area can be considered within the rigorous theoretical framework established by evolutionary genetics. In particular, the respective roles played by natural selection and genetic drift in shaping genetic diversity are also of fundamental importance for understanding the nature of viral emergence. Herein, we discuss whether there are evolutionary rules to viral emergence, and especially whether certain types of virus, or those that infect a particular type of host species, are more likely to emerge than others. We stress the complex interplay between rates of viral evolution and the ability to recognize cell receptors from phylogenetically divergent host species. We also emphasize the current lack of convincing data as to whether viral emergence requires adaptation to the new host species during the early stages of infection, or whether it is largely a chance process involving the transmission of a viral strain with the necessary genetic characteristics.

摘要

尽管有大量数据描述了促成病毒出现的生态因素,但对于使病毒跨越物种屏障并在新宿主中建立有效感染的进化过程却知之甚少。因此,了解病毒出现的进化基础是一个关键的研究目标,并且该领域的许多争论都可以在进化遗传学建立的严格理论框架内进行考量。特别是,自然选择和遗传漂变在塑造遗传多样性中所起的各自作用,对于理解病毒出现的本质也至关重要。在此,我们讨论病毒出现是否存在进化规律,尤其是某些类型的病毒,或者那些感染特定类型宿主物种的病毒,是否比其他病毒更有可能出现。我们强调病毒进化速率与从系统发育上不同的宿主物种识别细胞受体能力之间的复杂相互作用。我们还强调,目前缺乏令人信服的数据来表明病毒出现是否需要在感染早期适应新的宿主物种,或者它在很大程度上是否是一个涉及传播具有必要遗传特征的病毒株的偶然过程。

相似文献

1
The evolutionary genetics of viral emergence.
Curr Top Microbiol Immunol. 2007;315:51-66. doi: 10.1007/978-3-540-70962-6_3.
2
Introduction: conceptualizing and partitioning the emergence process of zoonotic viruses from wildlife to humans.
Curr Top Microbiol Immunol. 2007;315:1-31. doi: 10.1007/978-3-540-70962-6_1.
3
Predicting virus emergence amid evolutionary noise.
Open Biol. 2017 Oct;7(10). doi: 10.1098/rsob.170189.
4
Cross-species virus transmission and the emergence of new epidemic diseases.
Microbiol Mol Biol Rev. 2008 Sep;72(3):457-70. doi: 10.1128/MMBR.00004-08.
5
Infection and disease in reservoir and spillover hosts: determinants of pathogen emergence.
Curr Top Microbiol Immunol. 2007;315:113-31. doi: 10.1007/978-3-540-70962-6_6.
6
[Mechanisms of viral emergence and interspecies transmission: the exemple of simian foamy viruses in Central Africa].
Bull Acad Natl Med. 2013 Dec;197(9):1655-67; discussion 1667-8. doi: 10.1016/S0001-4079(19)31387-1.
7
Emerging viruses: why they are not jacks of all trades?
Curr Opin Virol. 2015 Feb;10:1-6. doi: 10.1016/j.coviro.2014.10.006. Epub 2014 Nov 19.
8
Reservoir host immune responses to emerging zoonotic viruses.
Cell. 2015 Jan 15;160(1-2):20-35. doi: 10.1016/j.cell.2014.12.003. Epub 2014 Dec 18.
9
Editorial overview: Emerging viruses: interspecies transmission: Expect the unexpected.
Curr Opin Virol. 2019 Feb;34:iii-vi. doi: 10.1016/j.coviro.2019.02.003. Epub 2019 Mar 21.
10
Evolutionary ecology of virus emergence.
Ann N Y Acad Sci. 2017 Feb;1389(1):124-146. doi: 10.1111/nyas.13304. Epub 2016 Dec 30.

引用本文的文献

1
Over time analysis of the codon usage of SARS-CoV-2 and its variants.
Comput Struct Biotechnol J. 2025 May 20;27:2034-2050. doi: 10.1016/j.csbj.2025.05.021. eCollection 2025.
2
Genomic hotspots in the DENV-2 serotype (E, NS4B, and NS5 genes) are associated with dengue disease severity in the endemic region of India.
PLoS Negl Trop Dis. 2025 Apr 29;19(4):e0013034. doi: 10.1371/journal.pntd.0013034. eCollection 2025 Apr.
3
Dynamics of natural selection preceding human viral epidemics and pandemics.
bioRxiv. 2025 Feb 28:2025.02.26.640439. doi: 10.1101/2025.02.26.640439.
4
Update on COVID-19 and Effectiveness of a Vaccination Campaign in a Global Context.
Int J Environ Res Public Health. 2022 Aug 28;19(17):10712. doi: 10.3390/ijerph191710712.
5
The human coronaviruses (HCoVs) and the molecular mechanisms of SARS-CoV-2 infection.
J Mol Med (Berl). 2021 Jan;99(1):93-106. doi: 10.1007/s00109-020-02012-8. Epub 2020 Dec 2.
6
Infection dynamics of gastrointestinal helminths in sympatric non-human primates, livestock and wild ruminants in Kenya.
PLoS One. 2019 Jun 10;14(6):e0217929. doi: 10.1371/journal.pone.0217929. eCollection 2019.
8
Multiple poliovirus-induced organelles suggested by comparison of spatiotemporal dynamics of membranous structures and phosphoinositides.
PLoS Pathog. 2018 Apr 27;14(4):e1007036. doi: 10.1371/journal.ppat.1007036. eCollection 2018 Apr.
10
MERS-CoV: Understanding the Latest Human Coronavirus Threat.
Viruses. 2018 Feb 24;10(2):93. doi: 10.3390/v10020093.

本文引用的文献

1
Characterization of the 1918 influenza virus polymerase genes.
Nature. 2005 Oct 6;437(7060):889-93. doi: 10.1038/nature04230.
2
Bats are natural reservoirs of SARS-like coronaviruses.
Science. 2005 Oct 28;310(5748):676-9. doi: 10.1126/science.1118391. Epub 2005 Sep 29.
3
Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats.
Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):14040-5. doi: 10.1073/pnas.0506735102. Epub 2005 Sep 16.
4
Ancient co-speciation of simian foamy viruses and primates.
Nature. 2005 Mar 17;434(7031):376-80. doi: 10.1038/nature03341.
5
Potential mammalian filovirus reservoirs.
Emerg Infect Dis. 2004 Dec;10(12):2073-81. doi: 10.3201/eid1012.040346.
6
High rate of viral evolution associated with the emergence of carnivore parvovirus.
Proc Natl Acad Sci U S A. 2005 Jan 11;102(2):379-84. doi: 10.1073/pnas.0406765102. Epub 2004 Dec 30.
8
Dengue emergence and adaptation to peridomestic mosquitoes.
Emerg Infect Dis. 2004 Oct;10(10):1790-6. doi: 10.3201/eid1010.030846.
9
Selection pressures in the capsid genes of plant RNA viruses reflect mode of transmission.
J Gen Virol. 2004 Oct;85(Pt 10):3149-3157. doi: 10.1099/vir.0.80134-0.
10
Viral evolution and the emergence of SARS coronavirus.
Philos Trans R Soc Lond B Biol Sci. 2004 Jul 29;359(1447):1059-65. doi: 10.1098/rstb.2004.1478.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验