Suppr超能文献

统计力学积分方程理论3D-HNC-RISM中过剩化学势的定位与可视化

Localization and visualization of excess chemical potential in statistical mechanical integral equation theory 3D-HNC-RISM.

作者信息

Du Qi-Shi, Liu Peng-Jun, Huang Ri-Bo

机构信息

Key Laboratory of Subtropical Bioresource Conservation and Utilization, Guangxi University, Nanning, Guangxi 530004, China.

出版信息

J Mol Graph Model. 2008 Feb;26(6):1014-9. doi: 10.1016/j.jmgm.2007.08.007. Epub 2007 Aug 31.

Abstract

In this study the excess chemical potential of the integral equation theory, 3D-RISM-HNC [Q. Du, Q. Wei, J. Phys. Chem. B 107 (2003) 13463-13470], is visualized in three-dimensional form and localized at interaction sites of solute molecule. Taking the advantage of reference interaction site model (RISM), the calculation equations of chemical excess potential are reformulized according to the solute interaction sites s in molecular space. Consequently the solvation free energy is localized at every interaction site of solute molecule. For visualization of the 3D-RISM-HNC calculation results, the excess chemical potentials are described using radial and three-dimensional diagrams. It is found that the radial diagrams of the excess chemical potentials are more sensitive to the bridge functions than the radial diagrams of solvent site density distributions. The diagrams of average excess chemical potential provide useful information of solute-solvent electrostatic and van der Waals interactions. The local description of solvation free energy at active sites of solute in 3D-RISM-HNC may broaden the application scope of statistical mechanical integral equation theory in solution chemistry and life science.

摘要

在本研究中,积分方程理论的超额化学势,即3D-RISM-HNC[Q. Du, Q. Wei, J. Phys. Chem. B 107 (2003) 13463 - 13470],以三维形式可视化,并定位在溶质分子的相互作用位点处。利用参考相互作用位点模型(RISM),根据分子空间中溶质的相互作用位点s重新制定了化学超额势的计算方程。因此,溶剂化自由能定位在溶质分子的每个相互作用位点上。为了可视化3D-RISM-HNC的计算结果,使用径向图和三维图来描述超额化学势。研究发现,超额化学势的径向图比溶剂位点密度分布的径向图对桥函数更敏感。平均超额化学势图提供了溶质 - 溶剂静电相互作用和范德华相互作用的有用信息。3D-RISM-HNC中溶质活性位点处溶剂化自由能的局部描述可能会拓宽统计力学积分方程理论在溶液化学和生命科学中的应用范围。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验