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大分子拥挤增加了折叠蛋白的结构含量。

Macromolecular crowding increases structural content of folded proteins.

作者信息

Perham Michael, Stagg Loren, Wittung-Stafshede Pernilla

机构信息

Department of Chemistry, Rice University, 6100 Main Street, Houston, TX 77251, USA.

出版信息

FEBS Lett. 2007 Oct 30;581(26):5065-9. doi: 10.1016/j.febslet.2007.09.049. Epub 2007 Oct 1.

DOI:10.1016/j.febslet.2007.09.049
PMID:17919600
Abstract

Here we show that increased amount of secondary structure is acquired in the folded states of two structurally-different proteins (alpha-helical VlsE and alpha/beta flavodoxin) in the presence of macromolecular crowding agents. The structural content of flavodoxin and VlsE is enhanced by 33% and 70%, respectively, in 400 mg/ml Ficoll 70 (pH 7, 20 degrees C) and correlates with higher protein-thermal stability. In the same Ficoll range, there are only small effects on the unfolded-state structures of the proteins. This is the first in vitro assessment of crowding effects on the native-state structures at physiological conditions. Our findings imply that for proteins with low intrinsic stability, the functional structures in vivo may differ from those observed in dilute buffers.

摘要

在此我们表明,在存在大分子拥挤剂的情况下,两种结构不同的蛋白质(α-螺旋VlsE和α/β型黄素氧还蛋白)在折叠状态下获得了更多的二级结构。在400 mg/ml聚蔗糖70(pH 7,20摄氏度)中,黄素氧还蛋白和VlsE的结构含量分别提高了33%和70%,且与更高的蛋白质热稳定性相关。在相同的聚蔗糖浓度范围内,对蛋白质的未折叠状态结构只有微小影响。这是首次在生理条件下对拥挤效应在天然状态结构上的体外评估。我们的研究结果表明,对于内在稳定性较低的蛋白质,其体内的功能结构可能与在稀缓冲液中观察到的不同。

相似文献

1
Macromolecular crowding increases structural content of folded proteins.大分子拥挤增加了折叠蛋白的结构含量。
FEBS Lett. 2007 Oct 30;581(26):5065-9. doi: 10.1016/j.febslet.2007.09.049. Epub 2007 Oct 1.
2
Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin.分子拥挤增强了α/β蛋白黄素氧还蛋白的天然结构和稳定性。
Proc Natl Acad Sci U S A. 2007 Nov 27;104(48):18976-81. doi: 10.1073/pnas.0705127104. Epub 2007 Nov 16.
3
Folding, stability and shape of proteins in crowded environments: experimental and computational approaches.拥挤环境中蛋白质的折叠、稳定性和形状:实验和计算方法。
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4
Macromolecular crowding modulates folding mechanism of alpha/beta protein apoflavodoxin.大分子拥挤调节α/β蛋白脱辅基黄素氧还蛋白的折叠机制。
Biophys J. 2009 Jan;96(2):671-80. doi: 10.1016/j.bpj.2008.10.014.
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Macromolecular crowding tunes folding landscape of parallel α/β protein, apoflavodoxin.大分子拥挤调控平行α/β 蛋白,脱辅基黄素蛋白的折叠景观。
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6
The extracellular protein VlsE is destabilized inside cells.细胞内的细胞外蛋白 VlsE 不稳定。
J Mol Biol. 2014 Jan 9;426(1):11-20. doi: 10.1016/j.jmb.2013.08.024. Epub 2013 Sep 4.
7
Thermal unfolding of Apo and Holo Desulfovibrio desulfuricans flavodoxin: cofactor stabilizes folded and intermediate states.脱硫弧菌脱辅基和全辅基黄素氧还蛋白的热变性:辅因子稳定折叠态和中间态。
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Folding of Desulfovibrio desulfuricans flavodoxin is accelerated by cofactor fly-casting.脱硫弧菌黄素氧还蛋白的折叠通过辅因子钓捕作用加速。
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Non-Steric Interactions Predict the Trend and Steric Interactions the Offset of Protein Stability in Cells.非空间相互作用预测细胞中蛋白质稳定性的趋势,而空间相互作用预测其偏移量。
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FMN binding and unfolding of Desulfovibrio desulfuricans flavodoxin: "hidden" intermediates at low denaturant concentrations.脱硫弧菌黄素氧还蛋白的黄素单核苷酸结合与去折叠:低变性剂浓度下的“隐藏”中间体
Biochim Biophys Acta. 2005 Mar 14;1747(2):239-50. doi: 10.1016/j.bbapap.2004.11.012. Epub 2004 Dec 19.

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