Gauthier Nicholas Paul, Larsen Malene Erup, Wernersson Rasmus, de Lichtenberg Ulrik, Jensen Lars Juhl, Brunak Søren, Jensen Thomas Skøt
Center for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark.
Nucleic Acids Res. 2008 Jan;36(Database issue):D854-9. doi: 10.1093/nar/gkm729. Epub 2007 Oct 16.
The past decade has seen the publication of a large number of cell-cycle microarray studies and many more are in the pipeline. However, data from these experiments are not easy to access, combine and evaluate. We have developed a centralized database with an easy-to-use interface, Cyclebase.org, for viewing and downloading these data. The user interface facilitates searches for genes of interest as well as downloads of genome-wide results. Individual genes are displayed with graphs of expression profiles throughout the cell cycle from all available experiments. These expression profiles are normalized to a common timescale to enable inspection of the combined experimental evidence. Furthermore, state-of-the-art computational analyses provide key information on both individual experiments and combined datasets such as whether or not a gene is periodically expressed and, if so, the time of peak expression. Cyclebase is available at http://www.cyclebase.org.
在过去十年中,大量细胞周期微阵列研究成果得以发表,还有更多研究正在进行中。然而,这些实验的数据不易获取、整合和评估。我们开发了一个拥有易于使用界面的集中式数据库Cyclebase.org,用于查看和下载这些数据。用户界面便于搜索感兴趣的基因以及下载全基因组结果。从所有可用实验中展示了各个基因在整个细胞周期中的表达谱图。这些表达谱被归一化到一个共同的时间尺度,以便检查综合实验证据。此外,先进的计算分析提供了关于单个实验和组合数据集的关键信息,例如一个基因是否周期性表达,如果是,其表达峰值时间。可通过http://www.cyclebase.org访问Cyclebase。