Zarnitsyna Veronika I, Huang Jun, Zhang Fang, Chien Yuan-Hung, Leckband Deborah, Zhu Cheng
Coulter Department of Biomedical Engineering and Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA 30332-0363, USA.
Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18037-42. doi: 10.1073/pnas.0704811104. Epub 2007 Nov 8.
Single-molecule biomechanical measurements, such as the force to unfold a protein domain or the lifetime of a receptor-ligand bond, are inherently stochastic, thereby requiring a large number of data for statistical analysis. Sequentially repeated tests are generally used to obtain a data ensemble, implicitly assuming that the test sequence consists of independent and identically distributed (i.i.d.) random variables, i.e., a Bernoulli sequence. We tested this assumption by using data from the micropipette adhesion frequency assay that generates sequences of two random outcomes: adhesion and no adhesion. Analysis of distributions of consecutive adhesion events revealed violation of the i.i.d. assumption, depending on the receptor-ligand systems studied. These include Markov sequences with positive (T cell receptor interacting with antigen peptide bound to a major histocompatibility complex) or negative (homotypic interaction between C-cadherins) feedbacks, where adhesion probability in the next test was increased or decreased, respectively, by adhesion in the immediate past test. These molecular interactions mediate cell adhesion and cell signaling. The ability to "remember" the previous adhesion event may represent a mechanism by which the cell regulates adhesion and signaling.
单分子生物力学测量,例如展开一个蛋白质结构域所需的力或受体 - 配体键的寿命,本质上是随机的,因此需要大量数据进行统计分析。通常使用顺序重复测试来获得一个数据总体,隐含地假设测试序列由独立同分布(i.i.d.)的随机变量组成,即一个伯努利序列。我们通过使用来自微量移液器粘附频率测定的数据来检验这个假设,该测定产生两种随机结果的序列:粘附和不粘附。对连续粘附事件分布的分析表明,根据所研究的受体 - 配体系统,独立同分布假设被违反。这些包括具有正反馈(T细胞受体与结合到主要组织相容性复合体的抗原肽相互作用)或负反馈(C - 钙粘蛋白之间的同型相互作用)的马尔可夫序列,其中下一次测试中的粘附概率分别因紧邻的上一次测试中的粘附而增加或降低。这些分子相互作用介导细胞粘附和细胞信号传导。“记住”先前粘附事件的能力可能代表细胞调节粘附和信号传导的一种机制。