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用于脑肿瘤诊断的高分辨率魔角旋转数据的量化与分类

Quantification and classification of high-resolution magic angle spinning data for brain tumor diagnosis.

作者信息

Poullet Jean-Baptiste, Martinez-Bisbal M Carmen, Valverde Dani, Monleon Daniel, Celda Bernardo, Arús Carles, Van Huffel Sabine

机构信息

Department of Electrical Engineering, SCD-SISTA, Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, 3001 Heverlee (Leuven), Belgium.

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2007;2007:5407-10. doi: 10.1109/IEMBS.2007.4353565.

DOI:10.1109/IEMBS.2007.4353565
PMID:18003231
Abstract

The goal of this work is to propose a complete protocol (preprocessing, processing and classification) for classifying brain tumors with proton high-resolution magic-angle spinning ((1)H HR-MAS) data. The different steps of the procedure are detailed and discussed. Feature extraction techniques such as peak integration, including also the automated quantitation method AQSES, were combined with linear (LDA) and non-linear (least-squares support vector machine or LS-SVM) classifiers. Classification accuracy was assessed using a stratified random sampling scheme. The results suggest that LS-SVM performs better than LDA while AQSES performs better than the standard peak integration feature extraction method.

摘要

这项工作的目标是提出一个完整的方案(预处理、处理和分类),用于利用质子高分辨率魔角旋转((1)H HR-MAS)数据对脑肿瘤进行分类。详细阐述并讨论了该过程的不同步骤。将诸如峰积分等特征提取技术(还包括自动定量方法AQSES)与线性(LDA)和非线性(最小二乘支持向量机或LS-SVM)分类器相结合。使用分层随机抽样方案评估分类准确性。结果表明,LS-SVM的性能优于LDA,而AQSES的性能优于标准峰积分特征提取方法。

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引用本文的文献

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Applications of high-resolution magic angle spinning MRS in biomedical studies II-Human diseases.高分辨率魔角旋转磁共振波谱在生物医学研究中的应用II-人类疾病
NMR Biomed. 2017 Nov;30(11). doi: 10.1002/nbm.3784. Epub 2017 Sep 15.
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A review of applications of metabolomics in cancer.代谢组学在癌症中的应用综述。
Metabolites. 2013 Jul 5;3(3):552-74. doi: 10.3390/metabo3030552.
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Identifying malignant transformations in recurrent low grade gliomas using high resolution magic angle spinning spectroscopy.利用高分辨率魔角旋转光谱技术鉴定复发性低级别胶质瘤中的恶性转化。
Artif Intell Med. 2012 May;55(1):61-70. doi: 10.1016/j.artmed.2012.01.002. Epub 2012 Mar 3.
4
Minimization of spectral pattern changes during HRMAS experiments at 37 degrees celsius by prior focused microwave irradiation.通过预先聚焦微波辐照,将 37°C 下 HRMAS 实验中的光谱模式变化降至最低。
MAGMA. 2012 Oct;25(5):401-10. doi: 10.1007/s10334-012-0303-1.
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Molecular classification of brain tumor biopsies using solid-state magic angle spinning proton magnetic resonance spectroscopy and robust classifiers.使用固态魔角旋转质子磁共振波谱和稳健分类器对脑肿瘤活检进行分子分类。
Int J Oncol. 2008 Nov;33(5):1017-25. doi: 10.3892/ijo_00000000.