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通过使用7-脱氮-2'-脱氧腺苷改进DNA测序的链终止法。

Improvements in the chain-termination method of DNA sequencing through the use of 7-deaza-2'-deoxyadenosine.

作者信息

Jensen M A, Zagursky R J, Trainor G L, Cocuzza A J, Lee A, Chen E Y

机构信息

Central Research and Development Department, E.I. du Pont de Nemours & Company (Inc.), Wilmington, DE 19898.

出版信息

DNA Seq. 1991;1(4):233-9. doi: 10.3109/10425179109020778.

DOI:10.3109/10425179109020778
PMID:1806040
Abstract

Significant improvements in the quality of DNA sequencing data have been shown when deoxyadenosine triphosphate (dATP) is replaced by 7-deaza-2'-deoxyadenosine triphosphate (c7dATP). The use of c7dATP in conjunction with 7-deaza-2'-deoxyguanosine triphosphate (c7dGTP) further decreases anomalies in electrophoretic mobility which are caused by compressions involving G and/or A residues. This effect is observed for both isotope-based and fluorescence-based sequencing approaches. Replacing dATP with c7dATP also results in a higher degree of uniformity in the frequency of chain termination reactions, when such terminations involve the incorporation of fluorescence-labeled dideoxynucleotides by T7 polymerase. These improvements in the gel-resolution and distribution of chain-terminated DNA products result in higher accuracy in both manual and automated base assignment.

摘要

当用7-脱氮-2'-脱氧三磷酸腺苷(c7dATP)取代脱氧三磷酸腺苷(dATP)时,DNA测序数据的质量有了显著提高。将c7dATP与7-脱氮-2'-脱氧鸟苷三磷酸(c7dGTP)结合使用,进一步减少了由涉及G和/或A残基的压缩引起的电泳迁移异常。在基于同位素和基于荧光的测序方法中均观察到这种效果。当链终止反应涉及T7聚合酶掺入荧光标记的双脱氧核苷酸时,用c7dATP取代dATP还会导致链终止反应频率的更高程度的均匀性。链终止DNA产物在凝胶分辨率和分布方面的这些改进,使得手动和自动碱基分配的准确性更高。

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引用本文的文献

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Increased stability of nucleic acids containing 7-deaza-guanosine and 7-deaza-adenosine may enable rapid DNA sequencing by matrix-assisted laser desorption mass spectrometry.含有7-脱氮鸟苷和7-脱氮腺苷的核酸稳定性增强,这可能使通过基质辅助激光解吸质谱法进行快速DNA测序成为可能。
Nucleic Acids Res. 1995 May 11;23(9):1570-5. doi: 10.1093/nar/23.9.1570.