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哺乳动物基因组重组率的演变。

Evolution of the genomic rate of recombination in mammals.

作者信息

Dumont Beth L, Payseur Bret A

机构信息

University of Wisconsin-Madison, Laboratory of Genetics, 425-GHenry Mall, Madison, Wisconsin 53706, USA.

出版信息

Evolution. 2008 Feb;62(2):276-94. doi: 10.1111/j.1558-5646.2007.00278.x. Epub 2007 Dec 6.

Abstract

Rates of recombination vary considerably between species. Despite the significance of this observation for evolutionary biology and genetics, the evolutionary mechanisms that contribute to these interspecific differences are unclear. On fine physical scales, recombination rates appear to evolve rapidly between closely related species, but the mode and tempo of recombination rate evolution on the broader scale is poorly understood. Here, we use phylogenetic comparative methods to begin to characterize the evolutionary processes underlying average genomic recombination rates in mammals. We document a strong phylogenetic effect in recombination rates, indicating that more closely related species tend to have more similar average rates of recombination. We demonstrate that this phylogenetic signal is not an artifact of errors in recombination rate estimation and show that it is robust to uncertainty in the mammalian phylogeny. Neutral evolutionary models present good fits to the data and we find no evidence for heterogeneity in the rate of evolution in recombination across the mammalian tree. These results suggest that observed interspecific variation in average genomic rates of recombination is largely attributable to the steady accumulation of neutral mutations over evolutionary time. Although single recombination hotspots may live and die on short evolutionary time scales, the strong phylogenetic signal in genomic recombination rates indicates that the pace of evolution on this scale may be considerably slower.

摘要

物种之间的重组率差异很大。尽管这一观察结果对进化生物学和遗传学具有重要意义,但导致这些种间差异的进化机制尚不清楚。在精细的物理尺度上,重组率似乎在密切相关的物种之间迅速进化,但在更广泛尺度上重组率进化的模式和速度却知之甚少。在这里,我们使用系统发育比较方法来开始描述哺乳动物平均基因组重组率背后的进化过程。我们记录了重组率中强烈的系统发育效应,表明关系越密切的物种往往具有更相似的平均重组率。我们证明这种系统发育信号不是重组率估计误差的产物,并表明它对哺乳动物系统发育中的不确定性具有鲁棒性。中性进化模型与数据拟合良好,并且我们没有发现整个哺乳动物谱系中重组进化速率存在异质性的证据。这些结果表明,观察到的种间平均基因组重组率差异在很大程度上可归因于进化时间内中性突变的稳定积累。尽管单个重组热点可能在短进化时间尺度上产生和消失,但基因组重组率中强烈的系统发育信号表明这个尺度上的进化速度可能相当缓慢。

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