通过核苷酸序列变异鉴别2型单纯疱疹病毒毒株
Discrimination of herpes simplex virus type 2 strains by nucleotide sequence variations.
作者信息
Kaneko Hisatoshi, Kawana Takashi, Ishioka Ken, Fukushima Eiko, Suzutani Tatsuo
机构信息
Department of Microbiology, Fukushima Medical University School of Medicine, Fukushima 960-1295, Japan.
出版信息
J Clin Microbiol. 2008 Feb;46(2):780-4. doi: 10.1128/JCM.01615-07. Epub 2007 Dec 12.
Abstract
We determined the polymorphous 400-bp regions in UL53, US1, and US4 for the discrimination of herpes simplex virus type 2 (HSV-2) strains. Thirty-six HSV-2 clinical strains could be differentiated into 35 groups using these three regions and into 36 groups by additional analysis of three noncoding regions previously reported as polymorphous.
摘要
我们确定了UL53、US1和US4中400bp的多态性区域，用于鉴别2型单纯疱疹病毒（HSV-2）毒株。利用这三个区域，36株HSV-2临床毒株可分为35组，通过对先前报道具有多态性的三个非编码区域进行额外分析，则可分为36组。
相似文献
1
Discrimination of herpes simplex virus type 2 strains by nucleotide sequence variations.通过核苷酸序列变异鉴别2型单纯疱疹病毒毒株
J Clin Microbiol. 2008 Feb;46(2):780-4. doi: 10.1128/JCM.01615-07. Epub 2007 Dec 12.
2
A 12-year molecular survey of clinical herpes simplex virus type 2 isolates demonstrates the circulation of clade A and B strains in Germany.一项针对临床单纯疱疹病毒 2 型分离株的 12 年分子调查表明，A 株和 B 株在德国流行。
J Clin Virol. 2010 Jul;48(3):208-11. doi: 10.1016/j.jcv.2010.04.009. Epub 2010 May 21.
3
Sequence-based methods for identifying epidemiologically linked herpes simplex virus type 2 strains.用于鉴定具有流行病学关联的2型单纯疱疹病毒毒株的基于序列的方法。
J Clin Microbiol. 2006 Jul;44(7):2541-6. doi: 10.1128/JCM.00054-06.
4
Sequencing and resolution of amplified herpes simplex virus DNA with intermediate melting curves as genotype 1 or 2 by LightCycler PCR assay.通过LightCycler PCR检测法对具有中间熔解曲线的扩增单纯疱疹病毒DNA进行测序和分辨，确定其为1型或2型基因型。
J Clin Microbiol. 2005 Apr;43(4):1843-5. doi: 10.1128/JCM.43.4.1843-1845.2005.
5
Impact of HIV-1 infection on herpes simplex virus type 2 genetic variability among co-infected individuals.HIV-1 感染对合并感染个体中单纯疱疹病毒 2 遗传变异性的影响。
J Med Virol. 2015 Mar;87(3):357-65. doi: 10.1002/jmv.24061. Epub 2014 Sep 1.
6
Detection and typing of herpes simplex DNA in genital swabs by real-time polymerase chain reaction.通过实时聚合酶链反应检测生殖器拭子中的单纯疱疹病毒DNA并进行分型。
J Virol Methods. 2005 Jun;126(1-2):203-6. doi: 10.1016/j.jviromet.2005.02.012.
7
Divergence and recombination of clinical herpes simplex virus type 2 isolates.2型临床单纯疱疹病毒分离株的分歧与重组
J Virol. 2007 Dec;81(23):13158-67. doi: 10.1128/JVI.01310-07. Epub 2007 Sep 19.
8
Phenotypic and genotypic methods for the detection of herpes simplex virus serotypes.检测单纯疱疹病毒血清型的表型和基因型方法。
J Virol Methods. 2003 Mar;108(1):97-102. doi: 10.1016/s0166-0934(02)00264-1.
9
Differentiation of herpes simplex virus types 1 and 2 in clinical samples by a real-time taqman PCR assay.通过实时Taqman PCR检测法对临床样本中的1型和2型单纯疱疹病毒进行鉴别
J Med Virol. 2005 Jul;76(3):350-5. doi: 10.1002/jmv.20365.
10
Sensitive and rapid detection of herpes simplex virus and varicella-zoster virus DNA by loop-mediated isothermal amplification.通过环介导等温扩增技术灵敏快速地检测单纯疱疹病毒和水痘-带状疱疹病毒DNA
J Clin Microbiol. 2005 Jul;43(7):3290-6. doi: 10.1128/JCM.43.7.3290-3296.2005.
引用本文的文献
1
miRNA-36 inhibits KSHV, EBV, HSV-2 infection of cells via stifling expression of interferon induced transmembrane protein 1 (IFITM1).miRNA-36 通过抑制干扰素诱导的跨膜蛋白 1（IFITM1）的表达来抑制细胞中 KSHV、EBV 和 HSV-2 的感染。
Sci Rep. 2017 Dec 21;7(1):17972. doi: 10.1038/s41598-017-18225-w.
2
Use of acyclovir for suppression of human immunodeficiency virus infection is not associated with genotypic evidence of herpes simplex virus type 2 resistance to acyclovir: analysis of specimens from three phase III trials.阿昔洛韦抑制人类免疫缺陷病毒感染的应用与单纯疱疹病毒 2 型对阿昔洛韦耐药的基因证据无关：来自三项 III 期临床试验的标本分析。
J Clin Microbiol. 2010 Oct;48(10):3496-503. doi: 10.1128/JCM.01263-10. Epub 2010 Aug 11.
本文引用的文献
1
Sequence-based methods for identifying epidemiologically linked herpes simplex virus type 2 strains.用于鉴定具有流行病学关联的2型单纯疱疹病毒毒株的基于序列的方法。
J Clin Microbiol. 2006 Jul;44(7):2541-6. doi: 10.1128/JCM.00054-06.
2
Sensitive and rapid detection of herpes simplex virus and varicella-zoster virus DNA by loop-mediated isothermal amplification.通过环介导等温扩增技术灵敏快速地检测单纯疱疹病毒和水痘-带状疱疹病毒DNA
J Clin Microbiol. 2005 Jul;43(7):3290-6. doi: 10.1128/JCM.43.7.3290-3296.2005.
3
Global identification of three major genotypes of varicella-zoster virus: longitudinal clustering and strategies for genotyping.水痘带状疱疹病毒三种主要基因型的全球鉴定：纵向聚类及基因分型策略
J Virol. 2004 Aug;78(15):8349-58. doi: 10.1128/JVI.78.15.8349-8358.2004.
4
Genetic variation of varicella-zoster virus: evidence for geographical separation of strains.水痘带状疱疹病毒的基因变异：毒株地理隔离的证据。
J Med Virol. 2003;70 Suppl 1:S42-7. doi: 10.1002/jmv.10319.
5
Comparison of polymorphism of thymidine kinase gene and restriction fragment length polymorphism of genomic DNA in herpes simplex virus type 1.1型单纯疱疹病毒胸苷激酶基因多态性与基因组DNA限制性片段长度多态性的比较
J Clin Microbiol. 2000 Jul;38(7):2750-2. doi: 10.1128/JCM.38.7.2750-2752.2000.
6
7
The genome sequence of herpes simplex virus type 2.单纯疱疹病毒2型的基因组序列。
J Virol. 1998 Mar;72(3):2010-21. doi: 10.1128/JVI.72.3.2010-2021.1998.
8
Quantitative analysis of genomic polymorphism of herpes simplex virus type 1 strains from six countries: studies of molecular evolution and molecular epidemiology of the virus.六个国家1型单纯疱疹病毒株基因组多态性的定量分析：病毒的分子进化与分子流行病学研究
J Gen Virol. 1994 Mar;75 ( Pt 3):513-27. doi: 10.1099/0022-1317-75-3-513.
9
Analysis of genomic polymorphism among herpes simplex virus type 2 isolates from four areas of Japan and three other countries.
J Med Virol. 1995 Mar;45(3):259-72. doi: 10.1002/jmv.1890450305.
10
An outbreak of herpes simplex virus type 1 in an intensive care nursery.
Pediatr Infect Dis. 1983 Jul-Aug;2(4):290-4. doi: 10.1097/00006454-198307000-00007.
Zotero 插件