Suppr超能文献

鱼腥藻铁氧化还原蛋白的动态磁结构特性

Dynamical magnetostructural properties of Anabaena ferredoxin.

作者信息

Schreiner Eduard, Nair Nisanth N, Pollet Rodolphe, Staemmler Volker, Marx Dominik

机构信息

Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany.

出版信息

Proc Natl Acad Sci U S A. 2007 Dec 26;104(52):20725-30. doi: 10.1073/pnas.0706740104. Epub 2007 Dec 18.

Abstract

A mixed quantum/classical investigation of the dynamical magnetostructural properties, that is, "magnetodynamics," of oxidized Anabaena PCC7119 ferredoxin is carried out at room temperature in two distinct conformational states. This protein hosts a [2Fe-2S] cluster in which two iron centers are antiferromagnetically coupled to an overall low-spin electronic ground state that has a genuine multireference character. To study the magnetodynamics of this prosthetic group, an approximate spin projection method is formulated in the framework of density functional theory that allows for multideterminant ab initio molecular dynamics simulations to be carried out efficiently. By using this scheme, the influence of both thermal fluctuations and conformational motion on the structure of the [2Fe-2S] cluster and on the dynamics of the antiferromagnetic coupling constant, J(t), has been investigated. In addition to demonstrating how sensitively the shape of the [2Fe-2S] core itself is affected by hydrogen bonding, the analyses reveal a complex dynamical coupling of J to both local vibrations and large-amplitude motion. It is shown that this interplay can be understood in terms of specific vibrational modes and distinct hydrogen-bonding patterns between the iron-sulfur cluster and the protein backbone, respectively. This implies going beyond the Goodenough-Kanamori rules for angular magnetostructural correlations of oxidized iron-sulfur prosthetic groups.

摘要

在室温下,对氧化态鱼腥藻PCC7119铁氧化还原蛋白的动态磁结构性质,即“磁动力学”,在两种不同的构象状态下进行了量子/经典混合研究。这种蛋白质含有一个[2Fe-2S]簇,其中两个铁中心反铁磁耦合到一个具有真正多参考特征的整体低自旋电子基态。为了研究这个辅基的磁动力学,在密度泛函理论框架内制定了一种近似自旋投影方法,该方法允许高效地进行多行列式从头算分子动力学模拟。通过使用该方案,研究了热涨落和构象运动对[2Fe-2S]簇结构以及反铁磁耦合常数J(t)动力学的影响。除了证明[2Fe-2S]核心本身的形状如何受到氢键的敏感影响外,分析还揭示了J与局部振动和大幅度运动之间复杂的动态耦合。结果表明,这种相互作用可以分别根据特定的振动模式以及铁硫簇与蛋白质主链之间不同的氢键模式来理解。这意味着超越了氧化态铁硫辅基角磁结构相关性的古德诺夫-金村规则。

相似文献

1
Dynamical magnetostructural properties of Anabaena ferredoxin.
Proc Natl Acad Sci U S A. 2007 Dec 26;104(52):20725-30. doi: 10.1073/pnas.0706740104. Epub 2007 Dec 18.
2
Magnetostructural dynamics of Rieske versus ferredoxin iron-sulfur cofactors.
Phys Chem Chem Phys. 2015 Mar 7;17(9):6289-96. doi: 10.1039/c4cp05465b.
7
Constrained spin-density dynamics of an iron-sulfur complex: ferredoxin cofactor.
J Chem Phys. 2012 Jun 14;136(22):224101. doi: 10.1063/1.4722552.

引用本文的文献

2
The unique fold and lability of the [2Fe-2S] clusters of NEET proteins mediate their key functions in health and disease.
J Biol Inorg Chem. 2018 Jun;23(4):599-612. doi: 10.1007/s00775-018-1538-8. Epub 2018 Feb 12.
3
Dynamical effects on the magnetic properties of dithiazolyl bistable materials.
Chem Sci. 2015 Apr 1;6(4):2371-2381. doi: 10.1039/c4sc03930k. Epub 2015 Jan 23.
4
The iron-sulfur core in Rieske proteins is not symmetric.
J Biol Inorg Chem. 2014 Dec;19(8):1287-93. doi: 10.1007/s00775-014-1185-7. Epub 2014 Aug 24.
5
The mechanism of hydrogen uptake in [NiFe] hydrogenase: first-principles molecular dynamics investigation of a model compound.
J Biol Inorg Chem. 2012 Jan;17(1):149-64. doi: 10.1007/s00775-011-0838-z. Epub 2011 Sep 3.

本文引用的文献

1
Structures and spectral signatures of protonated water networks in bacteriorhodopsin.
Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):6980-5. doi: 10.1073/pnas.0609229104. Epub 2007 Apr 16.
2
Calculation of redox properties: understanding short- and long-range effects in rubredoxin.
J Phys Chem B. 2007 Apr 19;111(15):3969-76. doi: 10.1021/jp067387y. Epub 2007 Mar 28.
6
Structure, function, and formation of biological iron-sulfur clusters.
Annu Rev Biochem. 2005;74:247-81. doi: 10.1146/annurev.biochem.74.082803.133518.
7
Assigning protonation patterns in water networks in bacteriorhodopsin based on computed IR spectra.
Angew Chem Int Ed Engl. 2004 Sep 13;43(36):4804-7. doi: 10.1002/anie.200453857.
9
The interface between the biological and inorganic worlds: iron-sulfur metalloclusters.
Science. 2003 May 9;300(5621):929-31. doi: 10.1126/science.1083075.
10

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验