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复杂网络制图:模块与通用角色

Cartography of complex networks: modules and universal roles.

作者信息

Guimerà Roger, Amaral Luís A Nunes

机构信息

NICO and Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA E-mail:

出版信息

J Stat Mech. 2005 Feb 1;2005(P02001):nihpa35573. doi: 10.1088/1742-5468/2005/02/P02001.

Abstract

Integrative approaches to the study of complex systems demand that one knows the manner in which the parts comprising the system are connected. The structure of the complex network defining the interactions provides insight into the function and evolution of the components of the system. Unfortunately, the large size and intricacy of these networks implies that such insight is usually difficult to extract. Here, we propose a method that allows one to systematically extract and display information contained in complex networks. Specifically, we demonstrate that one can (i) find modules in complex networks and (ii) classify nodes into universal roles according to their pattern of within- and between-module connections. The method thus yields a 'cartographic representation' of complex networks.

摘要

对复杂系统进行综合研究的方法要求人们了解构成系统的各个部分之间的连接方式。定义相互作用的复杂网络结构为洞察系统组件的功能和演化提供了线索。不幸的是,这些网络的规模巨大且错综复杂,这意味着通常很难提取到这样的线索。在此,我们提出一种方法,该方法能够让人们系统地提取并展示复杂网络中包含的信息。具体而言,我们证明人们可以(i)在复杂网络中找到模块,以及(ii)根据节点在模块内部和模块之间的连接模式将其分类为通用角色。因此,该方法产生了复杂网络的“地图表示”。

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本文引用的文献

1
Optimization by simulated annealing.模拟退火优化。
Science. 1983 May 13;220(4598):671-80. doi: 10.1126/science.220.4598.671.
3
Modularity from fluctuations in random graphs and complex networks.随机图和复杂网络波动中的模块化。
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Aug;70(2 Pt 2):025101. doi: 10.1103/PhysRevE.70.025101. Epub 2004 Aug 19.
5
Finding and evaluating community structure in networks.在网络中寻找并评估社区结构。
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Feb;69(2 Pt 2):026113. doi: 10.1103/PhysRevE.69.026113. Epub 2004 Feb 26.
6
Defining and identifying communities in networks.定义和识别网络中的群落。
Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):2658-63. doi: 10.1073/pnas.0400054101. Epub 2004 Feb 23.
7
Self-similar community structure in a network of human interactions.人类互动网络中的自相似社区结构。
Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Dec;68(6 Pt 2):065103. doi: 10.1103/PhysRevE.68.065103. Epub 2003 Dec 17.
8
Compartments revealed in food-web structure.食物网结构中揭示的分区
Nature. 2003 Nov 20;426(6964):282-5. doi: 10.1038/nature02115.
9
Biological networks: the tinkerer as an engineer.生物网络:修补匠即工程师。
Science. 2003 Sep 26;301(5641):1866-7. doi: 10.1126/science.1089072.
10
Modularity and extreme edges of the internet.互联网的模块化与极端边缘
Phys Rev Lett. 2003 Apr 11;90(14):148701. doi: 10.1103/PhysRevLett.90.148701.

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