• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

论体积数据的分子起源

On the molecular origins of volumetric data.

作者信息

Chalikian Tigran V

机构信息

Department of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, University of Toronto, 144 College Street, Toronto, Ontario M5S 3M2, Canada.

出版信息

J Phys Chem B. 2008 Jan 24;112(3):911-7. doi: 10.1021/jp709578u. Epub 2008 Jan 3.

DOI:10.1021/jp709578u
PMID:18171052
Abstract

We use a statistical thermodynamic approach and a simple thermodynamic model of hydration to examine the molecular origins of the volumetric properties of solutes. In this model, solute-solvent interactions are treated as a binding reaction. The free energy of hydration of the noninteracting solute species coincides with the free energy of cavity formation, while the free energy of solute-solvent interactions is given by the binding polynomial. By differentiating the relationship for the free energy of hydration with respect to temperature and pressure, one obtains the complete set of equations describing the thermodynamic profile of hydration, including enthalpy, entropy, volume, compressibility, expansibility, and so forth. The model enables one to rigorously define in thermodynamic terms the hydration number and the related concept of hydration shell, which are both widely used as operational definitions in experimental studies. Hydration number, nh, is the effective number of water molecules solvating the solute and represents the derivative of the free energy of hydration with respect to the logarithm of water activity. One traditional way of studying hydration relies on the use of volumetric measurements. However, microscopic interpretation of macroscopic volumetric data is complicated and currently relies on empirical models that are not backed by theory. We use our derived model to link the microscopic determinants of the volumetric properties of a solute and its statistical thermodynamic parameters. In this treatment, the partial molar volume, V degrees, of a solute depends on the cavity volume, hydration number, and the properties of waters of hydration. In contrast, the partial molar isothermal compressibility, K degrees T, and expansibility, E degrees, observables, in addition to the intrinsic compressibility and expansibility of the cavity enclosing the solute, hydration number, and the properties of waters of hydration, contain previously unappreciated relaxation terms that originate from pressure- and temperature-induced perturbation of the equilibrium between the solvated solute species. If significant, the relaxation terms may bring about a new level of nonadditivity to compressibility and expansibility group contributions that goes beyond the overlap of the hydration shells of adjacent groups. We apply our theoretical results to numerical analyses of the volume and compressibility responses to changes in the distribution of solvated species of polar compounds.

摘要

我们采用统计热力学方法和一个简单的水合热力学模型来研究溶质体积性质的分子起源。在这个模型中,溶质 - 溶剂相互作用被视为一种结合反应。非相互作用溶质物种的水合自由能与空穴形成的自由能一致,而溶质 - 溶剂相互作用的自由能由结合多项式给出。通过对水合自由能与温度和压力的关系进行微分,可得到描述水合热力学概况的完整方程组,包括焓、熵、体积、压缩性、膨胀性等等。该模型使人们能够从热力学角度严格定义水合数以及相关的水合壳概念,这两个概念在实验研究中都被广泛用作操作性定义。水合数(n_h)是溶剂化溶质的水分子的有效数量,代表水合自由能相对于水活度对数的导数。一种传统的研究水合的方法依赖于体积测量。然而,对宏观体积数据的微观解释很复杂,目前依赖于没有理论支持的经验模型。我们使用推导得到的模型将溶质体积性质的微观决定因素与其统计热力学参数联系起来。在这种处理中,溶质的偏摩尔体积(V^{\circ})取决于空穴体积、水合数以及水合水的性质。相比之下,溶质的偏摩尔等温压缩性(K_T^{\circ})和膨胀性(E^{\circ}),除了包围溶质的空穴的固有压缩性和膨胀性、水合数以及水合水的性质外,还包含以前未被认识到的弛豫项,这些弛豫项源于压力和温度引起的溶剂化溶质物种之间平衡的扰动。如果这些弛豫项很显著,它们可能会给压缩性和膨胀性基团贡献带来新的非加和性水平,这种非加和性超出了相邻基团水合壳的重叠。我们将理论结果应用于对极性化合物溶剂化物种分布变化的体积和压缩性响应的数值分析。

相似文献

1
On the molecular origins of volumetric data.论体积数据的分子起源
J Phys Chem B. 2008 Jan 24;112(3):911-7. doi: 10.1021/jp709578u. Epub 2008 Jan 3.
2
Volumetric properties of solvation in binary solvents.二元溶剂中溶剂化的体积性质。
J Phys Chem B. 2009 Feb 26;113(8):2443-50. doi: 10.1021/jp8089159.
3
The hydration of globular proteins as derived from volume and compressibility measurements: cross correlating thermodynamic and structural data.从体积和压缩性测量推导的球状蛋白质水合作用:热力学与结构数据的交叉关联
J Mol Biol. 1996 Jul 26;260(4):588-603. doi: 10.1006/jmbi.1996.0423.
4
Unraveling water's entropic mysteries: a unified view of nonpolar, polar, and ionic hydration.揭开水分子熵的奥秘:非极性、极性和离子水化的统一观点。
Acc Chem Res. 2008 Aug;41(8):957-67. doi: 10.1021/ar7001478.
5
Enthalpy-entropy contributions to salt and osmolyte effects on molecular-scale hydrophobic hydration and interactions.焓熵对盐和渗透溶质影响分子尺度疏水水合及相互作用的贡献。
J Phys Chem B. 2008 May 8;112(18):5661-70. doi: 10.1021/jp073485n.
6
Water coordination structures and the excess free energy of the liquid.水的配位结构和液体的过剩自由能。
J Chem Phys. 2011 Mar 28;134(12):124514. doi: 10.1063/1.3572058.
7
Solvent reorganization contribution to the transfer thermodynamics of small nonpolar molecules.溶剂重组对小非极性分子转移热力学的贡献。
Biopolymers. 1991 Jul;31(8):993-1008. doi: 10.1002/bip.360310809.
8
The SGB/NP hydration free energy model based on the surface generalized born solvent reaction field and novel nonpolar hydration free energy estimators.基于表面广义玻恩溶剂反应场和新型非极性水化自由能估计器的SGB/NP水化自由能模型。
J Comput Chem. 2002 Apr 15;23(5):517-29. doi: 10.1002/jcc.10045.
9
Solvation free energies of amino acid side chain analogs for common molecular mechanics water models.常见分子力学水模型中氨基酸侧链类似物的溶剂化自由能。
J Chem Phys. 2005 Apr 1;122(13):134508. doi: 10.1063/1.1877132.
10
MST continuum study of the hydration free energies of monovalent ionic species.单价离子物种水化自由能的MST连续介质研究
J Phys Chem B. 2005 Mar 3;109(8):3565-74. doi: 10.1021/jp047197s.

引用本文的文献

1
Study of fluconazole drug behavior in deep eutectic solvents: thermodynamic properties, solubility measurement, and fluorescence spectroscopy.氟康唑在深共熔溶剂中的药物行为研究:热力学性质、溶解度测定及荧光光谱分析
RSC Adv. 2025 Apr 9;15(14):11194-11214. doi: 10.1039/d4ra09043h. eCollection 2025 Apr 4.
2
Integral equation models for solvent in macromolecular crystals.大分子晶体溶剂的积分方程模型。
J Chem Phys. 2022 Jan 7;156(1):014801. doi: 10.1063/5.0070869.
3
Volumetric Properties of Four-Stranded DNA Structures.四链DNA结构的体积特性
Biology (Basel). 2021 Aug 22;10(8):813. doi: 10.3390/biology10080813.
4
The shaping of a molecular linguist: How a career studying DNA energetics revealed the language of molecular communication.分子语言学家的塑造:研究 DNA 能量学如何揭示分子通讯的语言。
J Biol Chem. 2021 Jan-Jun;296:100522. doi: 10.1016/j.jbc.2021.100522. Epub 2021 Apr 7.
5
Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures.蛋白质中氨基酸有序水合的结构:晶体结构分析
Acta Crystallogr D Biol Crystallogr. 2015 Nov;71(Pt 11):2192-202. doi: 10.1107/S1399004715015679. Epub 2015 Oct 27.
6
ProteinVolume: calculating molecular van der Waals and void volumes in proteins.蛋白质体积:计算蛋白质中的分子范德华体积和空穴体积。
BMC Bioinformatics. 2015 Mar 26;16(1):101. doi: 10.1186/s12859-015-0531-2.
7
Modeling biophysical and biological properties from the characteristics of the molecular electron density, electron localization and delocalization matrices, and the electrostatic potential.根据分子电子密度、电子定域和离域矩阵以及静电势的特征对生物物理和生物学特性进行建模。
J Comput Chem. 2014 Jun 15;35(16):1165-98. doi: 10.1002/jcc.23608. Epub 2014 Apr 29.