Yakovenko Olexander, Oliferenko Alexander A, Bdzhola Volodymyr G, Palyulin Vladimir A, Zefirov Nikolai S
Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine, 150 Zabolotny street, Kyiv 03143, Ukraine.
J Comput Chem. 2008 Jun;29(8):1332-43. doi: 10.1002/jcc.20892.
The Kirchhoff charge model is a viable method of generating inexpensive and electrostatically reasonable atomic charges for molecular mechanical force fields. The charging method uses a computationally fast algorithm based on the principle of electronegativity relaxation. Parameters of the method, orbital electronegativities and hardnesses, are fitted to reproduce reference, ab initio calculated dipole and quadrupole moments of a representative training set of neutral and charged organic molecules covering most medicinal chemistry relevant bonding situations. Transferability and accuracy of the derived parameters are confirmed on an external test set. Comparisons to other charge models are made. Implementation of the new Kirchhoff charges into a virtual screening engine is elucidated.
基尔霍夫电荷模型是一种为分子力学力场生成廉价且静电合理的原子电荷的可行方法。该充电方法使用基于电负性弛豫原理的计算快速算法。该方法的参数,即轨道电负性和硬度,经过拟合以重现一组具有代表性的中性和带电有机分子训练集的参考从头算偶极矩和四极矩,这些分子涵盖了大多数与药物化学相关的键合情况。在外部测试集上证实了导出参数的转移性和准确性。并与其他电荷模型进行了比较。阐明了将新的基尔霍夫电荷应用于虚拟筛选引擎的过程。