Verstraelen Toon, Van Speybroeck Veronique, Waroquier Michel
Center for Molecular Modeling, Ghent University, 9000 Ghent, Belgium.
J Chem Phys. 2009 Jul 28;131(4):044127. doi: 10.1063/1.3187034.
An extensive benchmark of the electronegativity equalization method (EEM) and the split charge equilibration (SQE) model on a very diverse set of organic molecules is presented. These models efficiently compute atomic partial charges and are used in the development of polarizable force fields. The predicted partial charges that depend on empirical parameters are calibrated to reproduce results from quantum mechanical calculations. Recently, SQE is presented as an extension of the EEM to obtain the correct size dependence of the molecular polarizability. In this work, 12 parametrization protocols are applied to each model and the optimal parameters are benchmarked systematically. The training data for the empirical parameters comprise of MP2/Aug-CC-pVDZ calculations on 500 organic molecules containing the elements H, C, N, O, F, S, Cl, and Br. These molecules have been selected by an ingenious and autonomous protocol from an initial set of almost 500,000 small organic molecules. It is clear that the SQE model outperforms the EEM in all benchmark assessments. When using Hirshfeld-I charges for the calibration, the SQE model optimally reproduces the molecular electrostatic potential from the ab initio calculations. Applications on chain molecules, i.e., alkanes, alkenes, and alpha alanine helices, confirm that the EEM gives rise to a divergent behavior for the polarizability, while the SQE model shows the correct trends. We conclude that the SQE model is an essential component of a polarizable force field, showing several advantages over the original EEM.
本文给出了对电负性均衡方法(EEM)和分裂电荷平衡(SQE)模型在一组非常多样的有机分子上的广泛基准测试。这些模型能有效地计算原子部分电荷,并用于可极化力场的开发。依赖于经验参数预测的部分电荷经过校准以重现量子力学计算的结果。最近,SQE作为EEM的扩展被提出,以获得分子极化率正确的尺寸依赖性。在这项工作中,对每个模型应用了12种参数化协议,并对最优参数进行了系统的基准测试。经验参数的训练数据包括对500个含有H、C、N、O、F、S、Cl和Br元素的有机分子进行的MP2/aug-cc-pVDZ计算。这些分子是通过一种巧妙的自主协议从最初近50万个小有机分子集合中挑选出来的。显然,在所有基准评估中,SQE模型都优于EEM。当使用Hirshfeld-I电荷进行校准时,SQE模型能最优地重现从头算计算得到的分子静电势。在链状分子(即烷烃、烯烃和α-丙氨酸螺旋)上的应用证实,EEM在极化率方面会产生发散行为,而SQE模型显示出正确的趋势。我们得出结论,SQE模型是可极化力场的一个重要组成部分,与原始的EEM相比具有几个优点。