原核生物中基因家族的共同进化。
Coevolution of gene families in prokaryotes.
作者信息
Cordero Otto X, Snel Berend, Hogeweg Paulien
机构信息
Theoretical Biology and Bioinformatics, University of Utrecht, 3584 CH Utrecht, The Netherlands.
出版信息
Genome Res. 2008 Mar;18(3):462-8. doi: 10.1101/gr.6815508. Epub 2008 Jan 29.
Abstract
We study gene family coevolution on a tree of life based on a large-scale ancestral gene content reconstruction, which includes gene duplication and deletion events. The insights obtained from this study are threefold: (1) Global properties, such as the distribution of coevolution partners and the formation of disconnected clusters of coevolving families, can be an inevitable consequence of evolution along a tree. (2) Concerted family expansion (gene duplication) and contraction (gene deletion) reflect functional constraints and therefore lead to better function prediction. (3) "Long-range" coevolutionary relationships, caused mostly by large family expansions or contractions, reveal high-level evolutionary organization of cellular processes in prokaryotes.
摘要
我们基于大规模的祖先基因含量重建，在生命之树上研究基因家族的共同进化，其中包括基因复制和缺失事件。这项研究获得的见解有三个方面：（1）全局特性，如共同进化伙伴的分布以及共同进化家族的不相连簇的形成，可能是沿着一棵树进化的必然结果。（2）协同的家族扩张（基因复制）和收缩（基因缺失）反映了功能限制，因此有助于更好地进行功能预测。（3）主要由大家族扩张或收缩引起的“远程”共同进化关系，揭示了原核生物中细胞过程的高级进化组织。
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