全局分子结构与界面：利用溶液X射线散射数据优化RNA:RNA复合物结构 - Suppr

Global molecular structure and interfaces: refining an RNA:RNA complex structure using solution X-ray scattering data.

作者信息

Zuo Xiaobing, Wang Jingbu, Foster Trenton R, Schwieters Charles D, Tiede David M, Butcher Samuel E, Wang Yun-Xing

机构信息

Protein Nucleic Acid Interaction Section, Structural Biophysics Laboratory, NCI-Frederick, National Istitutes of Health, Frederick, Maryland 21702, USA.

出版信息

J Am Chem Soc. 2008 Mar 19;130(11):3292-3. doi: 10.1021/ja7114508. Epub 2008 Feb 27.

DOI:10.1021/ja7114508

PMID:18302388

Abstract

摘要

相似文献

Global molecular structure and interfaces: refining an RNA:RNA complex structure using solution X-ray scattering data.

J Am Chem Soc. 2008 Mar 19;130(11):3292-3. doi: 10.1021/ja7114508. Epub 2008 Feb 27.

Time resolved SAXS and RNA folding.

Biopolymers. 2011 Aug;95(8):543-9. doi: 10.1002/bip.21604. Epub 2011 Feb 15.

Small-Angle Neutron Scattering for Structural Biology of Protein-RNA Complexes.

Methods Enzymol. 2015;558:391-415. doi: 10.1016/bs.mie.2015.02.003. Epub 2015 Apr 1.

A method for helical RNA global structure determination in solution using small-angle x-ray scattering and NMR measurements.

J Mol Biol. 2009 Oct 30;393(3):717-34. doi: 10.1016/j.jmb.2009.08.001. Epub 2009 Aug 8.

Analysis of X-ray and neutron scattering from biomacromolecular solutions.

Curr Opin Struct Biol. 2007 Oct;17(5):562-71. doi: 10.1016/j.sbi.2007.06.009. Epub 2007 Aug 21.

Small-angle scattering and its interplay with crystallography, contrast variation in SAXS and SANS.

Acta Crystallogr A. 2008 Jan;64(Pt 1):181-91. doi: 10.1107/S0108767307046569. Epub 2007 Dec 21.

Hybrid Applications of Solution Scattering to Aid Structural Biology.

Adv Exp Med Biol. 2017;1009:215-227. doi: 10.1007/978-981-10-6038-0_13.

Resolving conflicting crystallographic and NMR models for solution-state DNA with solution X-ray diffraction.

J Am Chem Soc. 2005 Jan 12;127(1):16-7. doi: 10.1021/ja044533+.

Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs.

Methods Enzymol. 2009;469:237-51. doi: 10.1016/S0076-6879(09)69011-X. Epub 2009 Nov 17.

Combined neutron and X-ray diffraction studies of DNA in crystals and solutions.

Acta Crystallogr D Biol Crystallogr. 2010 Nov;66(Pt 11):1244-8. doi: 10.1107/S0907444910017713. Epub 2010 Oct 20.

引用本文的文献

Coordinate-based simulation of pair distance distribution functions for small and large molecular assemblies: implementation and applications.

J Appl Crystallogr. 2024 Sep 17;57(Pt 5):1446-1455. doi: 10.1107/S1600576724007222. eCollection 2024 Oct 1.

An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans-cleaving Neurospora Varkud Satellite ribozyme.

Nucleic Acids Res. 2021 Nov 18;49(20):11959-11973. doi: 10.1093/nar/gkab963.

Long-Range RNA Structural Information via a Paramagnetically Tagged Reporter Protein.

J Am Chem Soc. 2019 Jan 30;141(4):1430-1434. doi: 10.1021/jacs.8b11384. Epub 2019 Jan 22.

Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.

Structure. 2018 Mar 6;26(3):490-498.e3. doi: 10.1016/j.str.2018.01.001. Epub 2018 Feb 2.

NMR Studies of the Structure and Function of the HIV-1 5'-Leader.

Viruses. 2016 Dec 21;8(12):338. doi: 10.3390/v8120338.

Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.

Nature. 2017 Jan 12;541(7636):242-246. doi: 10.1038/nature20599. Epub 2016 Nov 14.

Analysis of RNA structure using small-angle X-ray scattering.

Methods. 2017 Jan 15;113:46-55. doi: 10.1016/j.ymeth.2016.10.008. Epub 2016 Oct 21.

Structural Analysis of Multi-Helical RNAs by NMR-SAXS/WAXS: Application to the U4/U6 di-snRNA.

J Mol Biol. 2016 Feb 27;428(5 Pt A):777-789. doi: 10.1016/j.jmb.2015.11.026. Epub 2015 Dec 2.

Allosteric Activation of Bacterial Swi2/Snf2 (Switch/Sucrose Non-fermentable) Protein RapA by RNA Polymerase: BIOCHEMICAL AND STRUCTURAL STUDIES.

J Biol Chem. 2015 Sep 25;290(39):23656-69. doi: 10.1074/jbc.M114.618801. Epub 2015 Aug 13.

Small-angle X-ray scattering: a bridge between RNA secondary structures and three-dimensional topological structures.

Curr Opin Struct Biol. 2015 Feb;30:147-160. doi: 10.1016/j.sbi.2015.02.010. Epub 2015 Mar 10.

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型，支持多种主流文档格式。

立即体验

Global molecular structure and interfaces: refining an RNA:RNA complex structure using solution X-ray scattering data.

作者信息

机构信息

出版信息

相似文献

引用本文的文献

文献AI研究员

用中文搜PubMed

文档翻译

Suppr 超能文献

相似文献

引用本文的文献