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本文引用的文献

1
Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation.通过分子动力学模拟研究蛋白质弹性非相干中子散射谱的非高斯行为。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Apr;75(4 Pt 1):041912. doi: 10.1103/PhysRevE.75.041912. Epub 2007 Apr 24.
2
Estimating the influence of finite instrumental resolution on elastic neutron scattering intensities from proteins.估算有限仪器分辨率对蛋白质弹性中子散射强度的影响。
J Chem Phys. 2007 Mar 28;126(12):125107. doi: 10.1063/1.2711207.
3
C-phycocyanin hydration water dynamics in the presence of trehalose: an incoherent elastic neutron scattering study at different energy resolutions.海藻糖存在下C-藻蓝蛋白的水化水动力学:不同能量分辨率下的非相干弹性中子散射研究
Biophys J. 2007 Jun 1;92(11):4054-63. doi: 10.1529/biophysj.106.092114. Epub 2007 Mar 9.
4
A 2.13 A structure of E. coli dihydrofolate reductase bound to a novel competitive inhibitor reveals a new binding surface involving the M20 loop region.与一种新型竞争性抑制剂结合的大肠杆菌二氢叶酸还原酶的A 2.13 A结构揭示了一个涉及M20环区域的新结合表面。
J Med Chem. 2006 Nov 30;49(24):6977-86. doi: 10.1021/jm060570v.
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Influence of hydration on the dynamics of lysozyme.水合作用对溶菌酶动力学的影响。
Biophys J. 2006 Oct 1;91(7):2573-88. doi: 10.1529/biophysj.106.082214. Epub 2006 Jul 14.
6
Structure and hydride transfer mechanism of a moderate thermophilic dihydrofolate reductase from Bacillus stearothermophilus and comparison to its mesophilic and hyperthermophilic homologues.嗜热脂肪芽孢杆菌中度嗜热二氢叶酸还原酶的结构与氢化物转移机制及其与嗜温及嗜热同源物的比较
Biochemistry. 2005 Aug 30;44(34):11428-39. doi: 10.1021/bi050630j.
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Onsets of anharmonicity in protein dynamics.蛋白质动力学中不和谐性的起始
Phys Rev Lett. 2005 Jul 15;95(3):038101. doi: 10.1103/PhysRevLett.95.038101. Epub 2005 Jul 12.
8
Protein-water displacement distributions.蛋白质-水置换分布
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9
Fluctuations and correlations in crystalline protein dynamics: a simulation analysis of staphylococcal nuclease.结晶蛋白动力学中的涨落与关联:葡萄球菌核酸酶的模拟分析
Biophys J. 2005 Apr;88(4):2554-63. doi: 10.1529/biophysj.104.056101. Epub 2005 Jan 28.
10
Methyl group dynamics as a probe of the protein dynamical transition.作为蛋白质动力学转变探针的甲基动力学
J Am Chem Soc. 2004 Dec 15;126(49):15928-9. doi: 10.1021/ja0480623.

蛋白质动力学与稳定性:利用弹性非相干中子散射得出的嗜热和嗜温二氢叶酸还原酶中原子涨落的分布

Protein dynamics and stability: the distribution of atomic fluctuations in thermophilic and mesophilic dihydrofolate reductase derived using elastic incoherent neutron scattering.

作者信息

Meinhold Lars, Clement David, Tehei Moeava, Daniel Roy, Finney John L, Smith Jeremy C

机构信息

Heidelberg University, Interdisciplinary Center for Scientific Computing, Computational Molecular Biophysics, Heidelberg, Germany.

出版信息

Biophys J. 2008 Jun;94(12):4812-8. doi: 10.1529/biophysj.107.121418. Epub 2008 Feb 29.

DOI:10.1529/biophysj.107.121418
PMID:18310248
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2397366/
Abstract

The temperature dependence of the dynamics of mesophilic and thermophilic dihydrofolate reductase is examined using elastic incoherent neutron scattering. It is demonstrated that the distribution of atomic displacement amplitudes can be derived from the elastic scattering data by assuming a (Weibull) functional form that resembles distributions seen in molecular dynamics simulations. The thermophilic enzyme has a significantly broader distribution than its mesophilic counterpart. Furthermore, although the rate of increase with temperature of the atomic mean-square displacements extracted from the dynamic structure factor is found to be comparable for both enzymes, the amplitudes are found to be slightly larger for the thermophilic enzyme. Therefore, these results imply that the thermophilic enzyme is the more flexible of the two.

摘要

利用弹性非相干中子散射研究了嗜温与嗜热二氢叶酸还原酶动力学的温度依赖性。结果表明,通过假设一种类似于分子动力学模拟中所见分布的(威布尔)函数形式,可以从弹性散射数据中得出原子位移振幅的分布。嗜热酶的分布比嗜温酶的分布明显更宽。此外,虽然从动态结构因子中提取的原子均方位移随温度的增加速率在两种酶中相当,但发现嗜热酶的振幅略大。因此,这些结果表明嗜热酶在两者中更具柔韧性。