Spiriti Justin, Bogani Federica, van der Vaart Arjan, Ghirlanda Giovanna
Department of Chemistry and Biochemistry, Arizona State University, Tempe, AZ 85287, United States.
Biophys Chem. 2008 May;134(3):157-67. doi: 10.1016/j.bpc.2008.02.005. Epub 2008 Feb 21.
The post-translational modification of proteins by the covalent attachment of carbohydrates to specific side chains, or glycosylation, is emerging as a crucial process in modulating the function of proteins. In particular, the dynamic processing of the oligosaccharide can correlate with a change in function. For example, a potent macrophage-activating factor, Gc-MAF, is obtained from serum vitamin D binding protein (VDBP) by stepwise processing of the oligosaccharide attached to Thr 420 to the core alpha-GalNAc moiety. In previous work we designed a miniprotein analog of Gc-MAF, MM1, by grafting the glycosylated loop of Gc-MAF on a stable scaffold. GalNAc-MM1 showed native-like activity on macrophages (Bogani 2006, J. Am. Chem. Soc. 128 7142-43). Here, we present data on the thermodynamic stability and conformational dynamics of the mono- and diglycosylated forms. We observed an unusual trend: each glycosylation event destabilized the protein by about 1 kcal/mol. This effect is matched by an increase in the mobility of the glycosylated forms, as evaluated by molecular dynamics simulations. An analysis of the solvent-accessible surface area shows that glycosylation causes the three-helix bundle to adopt conformations in which the hydrophobic residues are more solvent exposed. The number of hydrophobic contacts is also affected. These two factors, which are ultimately explained with a change in occupancy for conformers of specific side chains, may contribute to the observed destabilization.
通过碳水化合物与特定侧链的共价连接对蛋白质进行翻译后修饰,即糖基化,正逐渐成为调节蛋白质功能的关键过程。特别是,寡糖的动态加工可能与功能变化相关。例如,一种强效巨噬细胞激活因子Gc-MAF,是通过对与苏氨酸420相连的寡糖逐步加工至核心α-GalNAc部分,从血清维生素D结合蛋白(VDBP)中获得的。在之前的工作中,我们通过将Gc-MAF的糖基化环嫁接到稳定支架上,设计了一种Gc-MAF的微型蛋白类似物MM1。GalNAc-MM1在巨噬细胞上表现出类似天然的活性(博加尼,2006年,《美国化学会志》128卷,7142 - 43页)。在此,我们展示了单糖基化和双糖基化形式的热力学稳定性和构象动力学数据。我们观察到一种不寻常的趋势:每次糖基化事件都会使蛋白质稳定性降低约1千卡/摩尔。通过分子动力学模拟评估,这种效应与糖基化形式的流动性增加相匹配。对溶剂可及表面积的分析表明,糖基化导致三螺旋束采取疏水残基更易暴露于溶剂中的构象。疏水接触的数量也受到影响。这两个因素最终可以用特定侧链构象异构体占有率的变化来解释,可能导致了观察到的稳定性降低。