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质体蓝素的玻璃态蛋白质动力学和巨大的溶剂重组能。

Glassy protein dynamics and gigantic solvent reorganization energy of plastocyanin.

作者信息

LeBard David N, Matyushov Dmitry V

机构信息

Center for Biological Physics, Arizona State University, PO Box 871604, Tempe, Arizona 85287-1604, USA.

出版信息

J Phys Chem B. 2008 Apr 24;112(16):5218-27. doi: 10.1021/jp709586e. Epub 2008 Mar 15.

Abstract

We report the results of molecular dynamics simulations of electron-transfer activation parameters of plastocyanin metalloprotein involved as an electron carrier in natural photosynthesis. We have discovered that slow, non-ergodic conformational fluctuations of the protein, coupled to hydrating water, result in a very broad distribution of donor-acceptor energy gaps far exceeding those observed for commonly studied inorganic and organic donor-acceptor complexes. The Stokes shift is not affected by these fluctuations and can be calculated from solvation models in terms of the linear response of the solvent dipolar polarization. The non-ergodic character of large-amplitude protein/water mobility breaks the strong link between the Stokes shift and the reorganization energy characteristic of equilibrium (ergodic) theories of electron transfer. This mechanism might be responsible for fast electronic transitions in natural electron-transfer proteins characterized by low reaction free energy.

摘要

我们报告了在自然光合作用中作为电子载体的质体蓝素质金属蛋白电子转移活化参数的分子动力学模拟结果。我们发现,蛋白质缓慢的、非遍历性的构象波动与水化水耦合,导致供体-受体能隙分布非常广泛,远远超过通常研究的无机和有机供体-受体复合物所观察到的能隙。斯托克斯位移不受这些波动的影响,可以根据溶剂偶极极化的线性响应从溶剂化模型中计算出来。大幅度蛋白质/水流动性的非遍历性特征打破了斯托克斯位移与电子转移平衡(遍历性)理论特征的重组能之间的紧密联系。这种机制可能是具有低反应自由能的天然电子转移蛋白中快速电子跃迁的原因。

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