Kurihara Tatsuo, Esaki Nobuyoshi
Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.
Chem Rec. 2008;8(2):67-74. doi: 10.1002/tcr.20141.
Dehalogenases catalyze the cleavage of the carbon-halogen bond of organohalogen compounds. They have been attracting a great deal of attention partly because of their potential applications in the chemical industry and bioremediation. In this personal account, we describe occurrences, reaction mechanisms, and applications of bacterial hydrolytic dehalogenases and related enzymes, particularly L-2-haloacid dehalogenase, DL-2-haloacid dehalogenase, fluoroacetate dehalogenase, and 2-haloacrylate reductase. L-2-Haloacid dehalogenase is a representative enzyme of the haloacid dehalogenase (HAD) superfamily, which includes the P-type ATPases and other hydrolases. Structural and mechanistic analyses of this enzyme have yielded important insights into the mode of action of the HAD superfamily proteins. Fluoroacetate dehalogenase is unique in that it catalyzes the cleavage of the highly stable C--F bond of a fluorinated aliphatic compound. In the reactions of L-2-haloacid dehalogenase and fluoroacetate dehalogenase, the carboxylate group of Asp performs a nucleophilic attack on the alpha-carbon atom of the substrate, displacing the halogen atom. This mechanism is common to haloalkane dehalogenase and 4-chlorobenzoyl-CoA dehalogenase. DL-2-Haloacid dehalogenase is unique in that a water molecule directly attacks the substrate, displacing the halogen atom. The occurrence of 2-haloacrylate reductase was recently reported, revealing a new pathway for the degradation of unsaturated aliphatic organohalogen compounds.
脱卤酶催化有机卤化合物中碳-卤键的断裂。它们一直备受关注,部分原因在于其在化学工业和生物修复中的潜在应用。在这篇个人综述中,我们描述了细菌水解脱卤酶及相关酶的存在情况、反应机制和应用,特别是L-2-卤代酸脱卤酶、DL-2-卤代酸脱卤酶、氟乙酸脱卤酶和2-卤代丙烯酸还原酶。L-2-卤代酸脱卤酶是卤代酸脱卤酶(HAD)超家族的代表性酶,该超家族包括P型ATP酶和其他水解酶。对这种酶的结构和机制分析为深入了解HAD超家族蛋白的作用模式提供了重要见解。氟乙酸脱卤酶的独特之处在于它催化氟化脂肪族化合物中高度稳定的C-F键的断裂。在L-2-卤代酸脱卤酶和氟乙酸脱卤酶的反应中,天冬氨酸的羧基对底物的α碳原子进行亲核攻击,取代卤原子。这种机制在卤代烷脱卤酶和4-氯苯甲酰辅酶A脱卤酶中是常见的。DL-2-卤代酸脱卤酶的独特之处在于水分子直接攻击底物,取代卤原子。最近报道了2-卤代丙烯酸还原酶的存在,揭示了不饱和脂肪族有机卤化合物降解的新途径。