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噢,苍蝇,你在哪儿?

O fly, where art thou?

作者信息

Grover Dhruv, Tower John, Tavaré Simon

机构信息

Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089-2910, USA.

出版信息

J R Soc Interface. 2008 Oct 6;5(27):1181-91. doi: 10.1098/rsif.2007.1333.

DOI:10.1098/rsif.2007.1333
PMID:18367442
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3226990/
Abstract

In this paper, the design of a real-time image acquisition system for tracking the movement of Drosophila in three-dimensional space is presented. The system uses three calibrated and synchronized cameras to detect multiple flies and integrates the detected fly silhouettes to construct the three-dimensional visual hull models of each fly. We used an extended Kalman filter to estimate the state of each fly, given past positions from the reconstructed fly visual hulls. The results show that our approach constructs the three-dimensional visual hull of each fly from the detected image silhouettes and robustly tracks them at real-time rates. The system is suitable for a more detailed analysis of fly behaviour.

摘要

本文介绍了一种用于跟踪果蝇在三维空间中运动的实时图像采集系统的设计。该系统使用三个经过校准和同步的相机来检测多只果蝇,并整合检测到的果蝇轮廓以构建每只果蝇的三维视觉外壳模型。给定从重建的果蝇视觉外壳中获取的过去位置,我们使用扩展卡尔曼滤波器来估计每只果蝇的状态。结果表明,我们的方法能够从检测到的图像轮廓构建每只果蝇的三维视觉外壳,并以实时速率稳健地跟踪它们。该系统适用于对果蝇行为进行更详细的分析。

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本文引用的文献

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PLoS One. 2009 Oct 28;4(10):e7580. doi: 10.1371/journal.pone.0007580.
2
Interaction ruling animal collective behavior depends on topological rather than metric distance: evidence from a field study.决定动物群体行为的相互作用取决于拓扑距离而非度量距离:一项实地研究的证据。
Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1232-7. doi: 10.1073/pnas.0711437105. Epub 2008 Jan 28.
3
MCMC-based particle filtering for tracking a variable number of interacting targets.基于马尔可夫链蒙特卡罗的粒子滤波用于跟踪可变数量的相互作用目标。
IEEE Trans Pattern Anal Mach Intell. 2005 Nov;27(11):1805-19. doi: 10.1109/TPAMI.2005.223.
4
Self-organized fish schools: an examination of emergent properties.自组织鱼群:对涌现特性的研究
Biol Bull. 2002 Jun;202(3):296-305. doi: 10.2307/1543482.
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The influence of visual landscape on the free flight behavior of the fruit fly Drosophila melanogaster.视觉景观对黑腹果蝇自由飞行行为的影响。
J Exp Biol. 2002 Feb;205(Pt 3):327-43. doi: 10.1242/jeb.205.3.327.