Suppr超能文献

体细胞中转座子介导的诱变:转座子-基因组DNA连接点的鉴定

Transposon-mediated mutagenesis in somatic cells: identification of transposon-genomic DNA junctions.

作者信息

Largaespada David A, Collier Lara S

机构信息

Department of Genetics, Cell Biology and Development, University of Minnesota, Minneapolis, MN.

出版信息

Methods Mol Biol. 2008;435:95-108. doi: 10.1007/978-1-59745-232-8_7.

Abstract

Understanding the genetic basis for tumor formation is crucial for treating cancer. Forward genetic screens using insertional mutagenesis technologies have identified many important tumor suppressor genes and oncogenes in mouse models of human cancer. Traditionally, retroviruses have been used for this purpose, allowing the identification of genes that can cause various forms of leukemia or lymphoma with murine leukemia viruses or mammary cancer with mouse mammary tumor viruses. Recently, the Sleeping Beauty transposon system has emerged as a tool for cancer gene discovery in mouse models of human cancer. Transposons mobilized in the mouse soma can insertionally mutate cancer genes, and the transposon itself serves as a molecular "tag," which facilitates candidate cancer gene identification. We provide an overview of some general issues related to use of Sleeping Beauty for cancer genetic studies and present here the polymerase chain reaction-based method for cloning transposon-tagged sequences from tumors.

摘要

了解肿瘤形成的遗传基础对于癌症治疗至关重要。利用插入诱变技术进行的正向遗传学筛选已在人类癌症小鼠模型中鉴定出许多重要的肿瘤抑制基因和癌基因。传统上,逆转录病毒一直用于此目的,可利用鼠白血病病毒鉴定能引发各种形式白血病或淋巴瘤的基因,以及利用小鼠乳腺肿瘤病毒鉴定引发乳腺癌的基因。最近,睡眠美杜莎转座子系统已成为人类癌症小鼠模型中癌症基因发现的一种工具。在小鼠体细胞中移动的转座子可通过插入使癌症基因发生突变,而转座子本身充当分子“标签”,便于鉴定候选癌症基因。我们概述了与使用睡眠美杜莎进行癌症遗传研究相关的一些一般问题,并在此介绍基于聚合酶链反应从肿瘤中克隆转座子标记序列的方法。

相似文献

1
Transposon-mediated mutagenesis in somatic cells: identification of transposon-genomic DNA junctions.
Methods Mol Biol. 2008;435:95-108. doi: 10.1007/978-1-59745-232-8_7.
3
Insertional mutagenesis of the mouse germline with Sleeping Beauty transposition.
Methods Mol Biol. 2008;435:109-25. doi: 10.1007/978-1-59745-232-8_8.
5
Mammalian mutagenesis using a highly mobile somatic Sleeping Beauty transposon system.
Nature. 2005 Jul 14;436(7048):221-6. doi: 10.1038/nature03691.
6
Mouse models of cancer: Sleeping Beauty transposons for insertional mutagenesis screens and reverse genetic studies.
Semin Cell Dev Biol. 2014 Mar;27:86-95. doi: 10.1016/j.semcdb.2014.01.006. Epub 2014 Jan 24.
8
Sleeping Beauty transposon mutagenesis of the rat genome in spermatogonial stem cells.
Methods. 2011 Apr;53(4):356-65. doi: 10.1016/j.ymeth.2010.12.014. Epub 2010 Dec 28.
9
Transposon-mediated mutagenesis of somatic cells in the mouse for cancer gene identification.
Methods. 2009 Nov;49(3):282-6. doi: 10.1016/j.ymeth.2009.07.002. Epub 2009 Jul 14.
10
Sleeping Beauty transposon insertional mutagenesis based mouse models for cancer gene discovery.
Curr Opin Genet Dev. 2015 Feb;30:66-72. doi: 10.1016/j.gde.2015.04.007. Epub 2015 Jun 4.

引用本文的文献

1
Histone H3K27 demethylase KDM6A is an epigenetic gatekeeper of mTORC1 signalling in cancer.
Gut. 2022 Aug;71(8):1613-1628. doi: 10.1136/gutjnl-2021-325405. Epub 2021 Sep 11.
2
Sleeping Beauty Mouse Models of Cancer: Microenvironmental Influences on Cancer Genetics.
Front Oncol. 2019 Jul 9;9:611. doi: 10.3389/fonc.2019.00611. eCollection 2019.
3
Sleeping beauty genetic screen identifies miR-23b::BTBD7 gene interaction as crucial for colorectal cancer metastasis.
EBioMedicine. 2019 Aug;46:79-93. doi: 10.1016/j.ebiom.2019.06.044. Epub 2019 Jul 11.
4
Ex Vivo Transposon-Mediated Genetic Screens for Cancer Gene Discovery.
Methods Mol Biol. 2019;1907:145-157. doi: 10.1007/978-1-4939-8967-6_12.
5
Identifying transposon insertions and their effects from RNA-sequencing data.
Nucleic Acids Res. 2017 Jul 7;45(12):7064-7077. doi: 10.1093/nar/gkx461.
7
Isolation and cultivation of naive-like human pluripotent stem cells based on HERVH expression.
Nat Protoc. 2016 Feb;11(2):327-46. doi: 10.1038/nprot.2016.016. Epub 2016 Jan 21.
9
Sleeping Beauty mouse models identify candidate genes involved in gliomagenesis.
PLoS One. 2014 Nov 25;9(11):e113489. doi: 10.1371/journal.pone.0113489. eCollection 2014.
10
A novel method for somatic transgenesis of the mouse prostate using the Sleeping Beauty transposon system.
Prostate. 2014 May;74(7):781-91. doi: 10.1002/pros.22797. Epub 2014 Mar 20.

本文引用的文献

1
Transposons for gene therapy!
Curr Gene Ther. 2006 Oct;6(5):593-607. doi: 10.2174/156652306778520647.
2
Gene mutations and genomic rearrangements in the mouse as a result of transposon mobilization from chromosomal concatemers.
PLoS Genet. 2006 Sep 29;2(9):e156. doi: 10.1371/journal.pgen.0020156. Epub 2006 Aug 3.
3
Gene-breaking transposon mutagenesis reveals an essential role for histone H2afza in zebrafish larval development.
Mech Dev. 2006 Jul;123(7):513-29. doi: 10.1016/j.mod.2006.06.002. Epub 2006 Jun 9.
4
Sleeping beauty: a novel cancer gene discovery tool.
Hum Mol Genet. 2006 Apr 15;15 Spec No 1:R75-9. doi: 10.1093/hmg/ddl061.
5
Retroviral insertional mutagenesis: past, present and future.
Oncogene. 2005 Nov 21;24(52):7656-72. doi: 10.1038/sj.onc.1209043.
6
Cancer gene discovery using the Sleeping Beauty transposon.
Cell Cycle. 2005 Dec;4(12):1744-8. doi: 10.4161/cc.4.12.2223. Epub 2005 Dec 5.
7
Redefining the common insertion site.
Virology. 2006 Jan 20;344(2):292-5. doi: 10.1016/j.virol.2005.08.047. Epub 2005 Nov 4.
8
Hopping around the tumor genome: transposons for cancer gene discovery.
Cancer Res. 2005 Nov 1;65(21):9607-10. doi: 10.1158/0008-5472.CAN-05-3085.
10

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验