Troyer Dean
Department of Pathology, University of Texas Health Science Center, San Antonio, TX, USA.
Methods Mol Biol. 2008;441:193-220. doi: 10.1007/978-1-60327-047-2_13.
Recent advances in high-throughput assays for gene expression (genomics), proteins (proteomics), and metabolites (metabolomics) have engendered a parallel need for well-annotated human biological samples. Samples from both diseased and unaffected normal tissues are often required. Biorepositories consist of a specimen bank linked to a database of information. Assuring chain of custody and annotation of samples with relevant clinical information is required. The value of samples to end users is generally commensurate with the quality and extent of relevant clinical data included with the samples. Procurement of tissues is often done with parallel pre- and/or post-treatment venipuncture to obtain blood and tissue samples from the same subject. Biorepositories must also process, preserve, and distribute samples to end users. Like traditional libraries, biorepositories are meant to be used, and they are most useful when the needs of end users (researchers) are considered in the planning and development process. Ethics review and an awareness of regulatory requirements for storage, transport, and distribution are required. In the USA, Institutional Review Boards are the local regulatory entities that review protocols for banking of human biological tissues. Governmental and professional agencies and organizations provide some guidelines for standard operating procedures. The Food and Drug Administration (FDA), the Centers For Disease Control (CDC), and professional organizations such as the American Association of Tissue Banks (AATB), the American Association of Blood Banks, The International Red Cross, International Society for Biological Repositories (ISBER) and other organizations provide guidelines for biorepositories and banking of human tissues (see Table 1). To date, these guidelines are directed largely toward procurement, banking, and distribution of human tissues for therapeutic uses. In the international setting, the World Health Organization provides ethical guidelines for procurement and operating procedures. The most commonly available tissues are formalin-fixed paraffin-embedded tissues (FFPET). While FFPET can be used for immunohistochemistry, certain DNA-based assays, and even RNA, frozen tissues are best suited for isolation and characterization of proteins and RNA. Freezers, back-up systems, monitors, and alarm systems and appropriate physical security are needed for long-term storage of frozen tissues. Other storage formats such as blotting onto filter paper for storage at room temperature are more commonly used for blood and can provide important "fingerprinting" for chain of custody, linking a given subject to a tissue sample.
基因表达(基因组学)、蛋白质(蛋白质组学)和代谢物(代谢组学)高通量检测技术的最新进展,使得对经过充分注释的人类生物样本的需求也相应增加。通常需要来自患病组织和未受影响的正常组织的样本。生物样本库由一个与信息数据库相连的标本库组成。需要确保样本的保管链以及用相关临床信息进行注释。样本对最终用户的价值通常与样本所包含的相关临床数据的质量和范围相当。组织采集通常会同时进行治疗前和/或治疗后的静脉穿刺,以便从同一受试者身上获取血液和组织样本。生物样本库还必须对样本进行处理、保存并分发给最终用户。与传统图书馆一样,生物样本库旨在供人使用,并且在规划和开发过程中考虑到最终用户(研究人员)的需求时最为有用。需要进行伦理审查并了解存储、运输和分发的监管要求。在美国,机构审查委员会是审查人类生物组织库协议的地方监管实体。政府和专业机构及组织提供了一些标准操作程序指南。美国食品药品监督管理局(FDA)、疾病控制中心(CDC)以及诸如美国组织库协会(AATB)、美国血库协会、国际红十字会、国际生物样本库协会(ISBER)等专业组织,提供了有关生物样本库和人类组织库的指南(见表1)。迄今为止,这些指南主要针对用于治疗用途的人类组织的采集、存储和分发。在国际层面,世界卫生组织提供了关于采集和操作程序的伦理指南。最常用的组织是福尔马林固定石蜡包埋组织(FFPET)。虽然FFPET可用于免疫组织化学、某些基于DNA的检测,甚至RNA检测,但冷冻组织最适合用于蛋白质和RNA的分离与表征。冷冻组织的长期存储需要冷冻机、备用系统、监控器、警报系统以及适当的物理安全措施。其他存储形式,如将样本印迹到滤纸上以便在室温下保存,更常用于血液样本,并且可为保管链提供重要的“指纹识别”,将特定受试者与组织样本联系起来。